View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755_low_23 (Length: 250)
Name: NF1755_low_23
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_low_23 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 9696205 - 9695962
Alignment:
| Q |
7 |
tccaagaatatcgaagagctccatgtaaaaggggaaaaagggaccaaatgagacaggctagagataatccccgttgccacaattatctatgaatgatata |
106 |
Q |
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| T |
9696205 |
tccaagaaaatcgaagagctccatgtaaaaggggaaaaagggaccaaatgagacaggctagagataatccccgttgccacaattatctatgaatgatata |
9696106 |
T |
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| Q |
107 |
ggtgttattaggttgtaaataattgtaagaaagatgttagagaaaaatcaaaatacagagacatactgtttgttaagtttgatttttatttttgacaaat |
206 |
Q |
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| T |
9696105 |
ggtgttattaggttgtaattaattgtaagaaagatgttagggaaaaatcaaaatagagagacatactgtttgttaagtttgatttttatttttgacaaat |
9696006 |
T |
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| Q |
207 |
gtttagtttgatttatattcatggcaaattatactaatagaact |
250 |
Q |
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| T |
9696005 |
ttttagtttgatttatattcactgcaaattatactaatagaact |
9695962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 13562582 - 13562339
Alignment:
| Q |
7 |
tccaagaatatcgaagagctccatgtaaaaggggaaaaagggaccaaatgagacaggctagagataatccccgttgccacaattatctatgaatgatata |
106 |
Q |
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| T |
13562582 |
tccaagaaaatcgaagagctccatgtaaaaggggaaaaagggaccaaatgagacaggctagagataatccccgttgccacaattatctatgaatgatata |
13562483 |
T |
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| Q |
107 |
ggtgttattaggttgtaaataattgtaagaaagatgttagagaaaaatcaaaatacagagacatactgtttgttaagtttgatttttatttttgacaaat |
206 |
Q |
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| T |
13562482 |
ggtgttattaggttgtaattaattgtaagaaagatgttagggaaaaatcaaaatagagagacatactgtttgttaagtttgatttttatttttgacaaat |
13562383 |
T |
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| Q |
207 |
gtttagtttgatttatattcatggcaaattatactaatagaact |
250 |
Q |
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| T |
13562382 |
ttttagtttgatttatattcactgcaaattatactaatagaact |
13562339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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