View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755_low_24 (Length: 249)
Name: NF1755_low_24
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 15019085 - 15019195
Alignment:
| Q |
130 |
gtagctgtaaatatgtgatgtgtagtaaaaagaagataattacctctcccatagcaaaaatattgtatactaaatcaaatgatctgatccattttcacca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15019085 |
gtagctgtaaatatgtgatgtgtagtaaaaagaagataattacctctcccatagcaaaaatattgtatactaaatcaaatgatctgatccattttcacca |
15019184 |
T |
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| Q |
230 |
ataccctttgc |
240 |
Q |
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||||||||||| |
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| T |
15019185 |
ataccctttgc |
15019195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 15026203 - 15026313
Alignment:
| Q |
130 |
gtagctgtaaatatgtgatgtgtagtaaaaagaagataattacctctcccatagcaaaaatattgtatactaaatcaaatgatctgatccattttcacca |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15026203 |
gtagctgtaaatatgtgatgtgtagtaaaaagaagataattacctctcccatagcaaaaatattgtatactaaatcaaatgatctgatccattttcacca |
15026302 |
T |
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| Q |
230 |
ataccctttgc |
240 |
Q |
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||||||||||| |
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| T |
15026303 |
ataccctttgc |
15026313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 15044328 - 15044437
Alignment:
| Q |
130 |
gtagctgtaaatatgtgatgtgtagtaaaaagaagataattacctctcccatagcaaaaatattgtatactaaatcaaatgatctgatccattttcacca |
229 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
15044328 |
gtagctgtaaatatgtgatgtgtggtaaaa-gaagataattacctctcccattgcaaaaatgttgtatactaaatcaaatgttctgatccattttcacca |
15044426 |
T |
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| Q |
230 |
ataccctttgc |
240 |
Q |
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|||||||||| |
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| T |
15044427 |
gtaccctttgc |
15044437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 15004554 - 15004645
Alignment:
| Q |
148 |
tgtgtagtaaaaagaagataattacctctcccatagcaaaaatattgtatactaaatcaaatgatctgatccattttcaccaataccctttgc |
240 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
15004554 |
tgtgtagtaaaa-gaagataattacctctcccatagcaaaaatgatgtatagtaaatcaaatgatctgatccattttcaccagtaccctttgc |
15004645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 15018956 - 15019024
Alignment:
| Q |
1 |
cagtgtgggtaacatctttgagttcnnnnnnngggaccatcaacagaatgcaaattcttttgttgatga |
69 |
Q |
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| T |
15018956 |
cagtgtgggttacatctttgagttcaaaaaaagggaccattaacagaatgcaaattcttttgttgatga |
15019024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 15026074 - 15026142
Alignment:
| Q |
1 |
cagtgtgggtaacatctttgagttcnnnnnnngggaccatcaacagaatgcaaattcttttgttgatga |
69 |
Q |
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| T |
15026074 |
cagtgtgggttacatctttgagttcaaaaaaagggaccattaacagaatgcaaattcttttgttgatga |
15026142 |
T |
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