View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1755_low_26 (Length: 247)

Name: NF1755_low_26
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1755_low_26
NF1755_low_26
[»] chr7 (22 HSPs)
chr7 (9-231)||(36464167-36464385)
chr7 (54-230)||(8414489-8414652)
chr7 (54-230)||(3934977-3935139)
chr7 (55-230)||(3932738-3932899)
chr7 (57-230)||(19786786-19786964)
chr7 (55-230)||(19789092-19789272)
chr7 (55-226)||(8733495-8733654)
chr7 (53-141)||(8731174-8731262)
chr7 (55-141)||(18395411-18395497)
chr7 (55-141)||(42678571-42678657)
chr7 (55-141)||(16496953-16497039)
chr7 (55-141)||(16535135-16535221)
chr7 (55-141)||(16630441-16630527)
chr7 (55-230)||(3052227-3052387)
chr7 (143-230)||(28610315-28610401)
chr7 (52-141)||(21769066-21769155)
chr7 (174-230)||(8731280-8731336)
chr7 (179-231)||(18395336-18395388)
chr7 (55-109)||(42680808-42680862)
chr7 (57-125)||(19093846-19093912)
chr7 (166-215)||(19093944-19093993)
chr7 (177-210)||(42678669-42678702)
[»] scaffold0599 (1 HSPs)
scaffold0599 (55-230)||(1639-1801)
[»] chr8 (6 HSPs)
chr8 (53-231)||(24519151-24519316)
chr8 (55-230)||(21268120-21268291)
chr8 (55-230)||(4877015-4877176)
chr8 (55-230)||(4879343-4879504)
chr8 (55-230)||(36379465-36379628)
chr8 (54-230)||(36377180-36377343)
[»] chr3 (3 HSPs)
chr3 (54-230)||(4533155-4533318)
chr3 (55-230)||(4530858-4531020)
chr3 (179-228)||(18966221-18966270)
[»] chr4 (13 HSPs)
chr4 (55-230)||(13774174-13774336)
chr4 (55-230)||(45162202-45162364)
chr4 (54-230)||(42468438-42468600)
chr4 (55-230)||(42470768-42470929)
chr4 (55-230)||(19429076-19429238)
chr4 (55-141)||(50855771-50855857)
chr4 (58-141)||(13776546-13776630)
chr4 (57-230)||(45167094-45167254)
chr4 (176-230)||(50855868-50855922)
chr4 (190-230)||(13776472-13776512)
chr4 (179-230)||(8739416-8739467)
chr4 (178-220)||(24908156-24908198)
chr4 (55-116)||(8739501-8739562)
[»] chr2 (15 HSPs)
chr2 (55-230)||(31486906-31487069)
chr2 (53-230)||(31489190-31489355)
chr2 (55-141)||(42275556-42275642)
chr2 (55-141)||(42277782-42277868)
chr2 (55-141)||(5164151-5164237)
chr2 (61-141)||(8995076-8995156)
chr2 (61-141)||(15730013-15730093)
chr2 (54-230)||(23860026-23860188)
chr2 (55-117)||(39816089-39816151)
chr2 (166-230)||(29802003-29802067)
chr2 (63-116)||(34576612-34576665)
chr2 (174-230)||(42275660-42275716)
chr2 (174-230)||(42277886-42277942)
chr2 (177-218)||(8995169-8995210)
chr2 (173-230)||(34576694-34576752)
[»] chr1 (15 HSPs)
chr1 (55-230)||(29833076-29833236)
chr1 (55-230)||(734579-734739)
chr1 (54-141)||(10911449-10911536)
chr1 (55-141)||(29833960-29834046)
chr1 (55-230)||(10909131-10909292)
chr1 (55-141)||(8933549-8933635)
chr1 (55-141)||(13011795-13011881)
chr1 (55-230)||(2409957-2410110)
chr1 (55-134)||(2403835-2403915)
chr1 (176-230)||(29833895-29833949)
chr1 (173-230)||(2403931-2403988)
chr1 (179-230)||(13011721-13011772)
chr1 (177-230)||(8933648-8933701)
chr1 (174-230)||(10911375-10911431)
chr1 (171-215)||(18353850-18353894)
[»] chr5 (17 HSPs)
chr5 (55-230)||(11852175-11852326)
chr5 (54-141)||(11849916-11850003)
chr5 (55-141)||(23164254-23164340)
chr5 (54-141)||(22601000-22601088)
chr5 (55-141)||(37215551-37215638)
chr5 (55-141)||(1779222-1779303)
chr5 (176-230)||(11850014-11850068)
chr5 (55-133)||(21743719-21743797)
chr5 (177-230)||(37207895-37207948)
chr5 (176-230)||(23164347-23164401)
chr5 (55-126)||(37207998-37208070)
chr5 (55-116)||(15469197-15469258)
chr5 (177-230)||(37215486-37215539)
chr5 (176-230)||(22600935-22600989)
chr5 (166-224)||(21743651-21743709)
chr5 (177-230)||(1779316-1779369)
chr5 (179-219)||(1779181-1779221)
[»] scaffold0008 (1 HSPs)
scaffold0008 (55-141)||(88445-88531)
[»] scaffold1361 (1 HSPs)
scaffold1361 (55-141)||(53-140)
[»] scaffold0098 (1 HSPs)
scaffold0098 (55-133)||(3707-3785)
[»] scaffold0050 (4 HSPs)
scaffold0050 (166-230)||(31677-31741)
scaffold0050 (55-116)||(29453-29514)
scaffold0050 (55-116)||(31768-31829)
scaffold0050 (166-230)||(29362-29426)
[»] chr6 (1 HSPs)
chr6 (57-116)||(20642300-20642359)
[»] scaffold0045 (2 HSPs)
scaffold0045 (52-116)||(64082-64144)
scaffold0045 (52-116)||(71414-71476)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 36464167 - 36464385
Alignment:
Q  9 caagtatcatcctaatgtagcacaaagcatttttcgaggaatcatttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattct 108  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464167 caagtatcatcctaatgtagcacaaagcatttttcgaggaatcgtttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattct 36464266  T
Q  109 caaagaaaagttatattacttgaatgattcaattaatgcttgactatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatact 208  Q
    ||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36464267 caaagaaaagttatattacttgaatgattc----aatgcttgactatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatact 36464362  T
Q  209 actctaggaaggctctccattat 231  Q
    |||||||||||||||||||||||    
T  36464363 actctaggaaggctctccattat 36464385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 54 - 230
Target Start/End: Original strand, 8414489 - 8414652
Alignment:
Q  54 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 153  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||    ||||||||| |    
T  8414489 ttggctcagggacaaaaggaaaggtagagaaaatagaaaaacactctaatattctcaaagaaaagttatattatttgaatgattc----aatgcttgaat 8414584  T
Q  154 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8414585 atg---------cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 8414652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 3935139 - 3934977
Alignment:
Q  54 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 153  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| |    
T  3935139 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatt 3935044  T
Q  154 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||||||||||||          |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  3935043 atgcttgagtat----------ccaaaacactagatggtgagccttatttatactattctaggaaggctctccatta 3934977  T

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Target: chr7; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 3932899 - 3932738
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 154  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| ||    
T  3932899 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatta 3932804  T
Q  155 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||||||||          |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  3932803 tgcttgagtat----------ccaaaacactagatggtgagccttatttatactattctaggaaggctctccatta 3932738  T

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Target: chr7; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 57 - 230
Target Start/End: Complemental strand, 19786964 - 19786786
Alignment:
Q  57 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaattaatg-----cttg 150  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||   ||     ||||    
T  19786964 gctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatcttg 19786865  T
Q  151 actatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    | ||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19786864 agtat-cttgaatgtcttgaatatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 19786786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 19789272 - 19789092
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaattaatg-----ct 148  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||   ||     ||    
T  19789272 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaatgcttgattatct 19789173  T
Q  149 tgactatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||| ||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19789172 tgagtat-cttgaatgtcttgaatatgccaaaacactaggtggtgagccttatttatactactctagtaaggctctccatta 19789092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 55 - 226
Target Start/End: Original strand, 8733495 - 8733654
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaattaatgcttgact 153  Q
    |||||||||||||||||  |||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||    ||||||      
T  8733495 tggctcagggacaaaagagaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaat----gcttgatg 8733590  T
Q  154 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctcc 226  Q
    ||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8733591 at---------tcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctcc 8733654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 8731174 - 8731262
Alignment:
Q  53 tttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8731174 tttggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 8731262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 18395497 - 18395411
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18395497 tggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 18395411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 42678571 - 42678657
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42678571 tggctcagggacaaaaggaaaggtagagaaaataaagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 42678657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 16496953 - 16497039
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16496953 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16497039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 16535135 - 16535221
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16535135 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16535221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 16630527 - 16630441
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16630527 tggctcggggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttaaatgattcaat 16630441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 3052387 - 3052227
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 154  Q
    ||||| |||||||||||||| ||||||||||||  ||||||  |||| ||||||||||||||  |||||||| ||||||| ||||||    |||||| ||    
T  3052387 tggctgagggacaaaaggaatggtagagaaaataaagaaac--tctattattctcaaagaaagtttatattatttgaatgcttcaat----gcttgagta 3052294  T
Q  155 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    | ||||||||| |         ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3052293 tacttgagtatat---------caaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 3052227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 28610315 - 28610401
Alignment:
Q  143 aatgcttgactatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||||||||| ||||||| ||||||| || | |||| ||||||| ||||||||||||||||||||||||||||| |||||||| |||||    
T  28610315 aatgcttgagtatgcttcagtatct-gaatgtgcctaaacacttggtggtgagccttatttatactactctagaaaggctctacatta 28610401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 21769066 - 21769155
Alignment:
Q  52 atttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    |||| |||||||||  |||||||||||||||||||| ||||||| || |||||||||||||||||  |  ||||| ||||||| ||||||    
T  21769066 attttgctcagggatgaaaggaaaggtagagaaaatagagaaactctttaatattctcaaagaaagttgttattatttgaatgtttcaat 21769155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 8731280 - 8731336
Alignment:
Q  174 tgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||| |||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  8731280 tgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacatta 8731336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 18395388 - 18395336
Alignment:
Q  179 aaacactaggtggtgagccttatttatactactctaggaaggctctccattat 231  Q
    |||||||  ||||||||||||||||||||||||||||||||||||| ||||||    
T  18395388 aaacacttagtggtgagccttatttatactactctaggaaggctctacattat 18395336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 42680862 - 42680808
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctc 109  Q
    ||||| ||| |||||| |||||||||||||||| |||||||||||||||||||||    
T  42680862 tggctgaggaacaaaatgaaaggtagagaaaatagagaaacactctaatattctc 42680808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 125
Target Start/End: Original strand, 19093846 - 19093912
Alignment:
Q  57 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatatt 125  Q
    |||||||| |||||||| |||||||||||||  |||||| ||||||||||||||||||||  |||||||    
T  19093846 gctcagggtcaaaaggagaggtagagaaaat--agaaactctctaatattctcaaagaaagtttatatt 19093912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 19093944 - 19093993
Alignment:
Q  166 cttgagtatgccaaaacactaggtggtgagccttatttatactactctag 215  Q
    ||||||||||||  |||||| ||||| || ||||||||||||||||||||    
T  19093944 cttgagtatgcctgaacacttggtggcgaaccttatttatactactctag 19093993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 42678669 - 42678702
Alignment:
Q  177 caaaacactaggtggtgagccttatttatactac 210  Q
    ||||||||| ||||||||||||||||||||||||    
T  42678669 caaaacacttggtggtgagccttatttatactac 42678702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 1801 - 1639
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 154  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    |||||||||  |    
T  1801 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatatcctcaaagaaaagttatattacttgaatgattc----aatgcttgatga 1706  T
Q  155 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1705 tg---------cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 1639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 53 - 231
Target Start/End: Original strand, 24519151 - 24519316
Alignment:
Q  53 tttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgac 152  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    |||||||||     
T  24519151 tttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctctaagaaaagttatattacttgaatgattc----aatgcttgat 24519246  T
Q  153 tatgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccattat 231  Q
    ||||         ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24519247 tatg---------cttcagtatgccaaaacactagatggtgagccttatttatactactctaggaaggctctccattat 24519316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 21268120 - 21268291
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttgact 153  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||    |||||| |    
T  21268120 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat----gcttgatt 21268215  T
Q  154 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    || ||||||||| | || |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  21268216 at-cttgagtatttggattatgcctaaacactaggtagtgagccttatttatactactctaggaaggctctccatta 21268291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 4877176 - 4877015
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 154  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||              |    
T  4877176 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttgaatcattca--------------a 4877091  T
Q  155 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4877090 tgcttgattatcttgagtatgtcaaaacactagatggtgagccttatttatactactctaggaaggctctccatta 4877015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 4879504 - 4879343
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 154  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||              |    
T  4879504 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaggaaaagttatattacttgaatcattca--------------a 4879419  T
Q  155 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4879418 tgcttgattatcttgagtatgtcaaaacactagatggtgagccttatttatactactctaggaaggctctccatta 4879343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 36379465 - 36379628
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaattaatgcttgact 153  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||                  
T  36379465 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattca-------------- 36379550  T
Q  154 atgcttgagtatcttgagtatgccaaaaca-ctaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  36379551 atgcttgattatcttgagtatgccaaaacacccaggtggtgagccttatttatactactctaggaaggctctccatta 36379628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 54 - 230
Target Start/End: Original strand, 36377180 - 36377343
Alignment:
Q  54 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaag-aaaagttatattacttgaatgattcaattaatgcttgac 152  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||               
T  36377180 ttggctcaaggacaaa-ggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattcaat----------- 36377267  T
Q  153 tatgcttgagtatcttgagtatgccaaaacact-aggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
       |||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36377268 ---gcttgattattttgagtatgccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccatta 36377343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 4533318 - 4533155
Alignment:
Q  54 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 153  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||      
T  4533318 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatg 4533223  T
Q  154 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4533222 atg---------cttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacatta 4533155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 4531020 - 4530858
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 154  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||  |    
T  4531020 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatga 4530925  T
Q  155 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4530924 tg---------cttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacatta 4530858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 179 - 228
Target Start/End: Original strand, 18966221 - 18966270
Alignment:
Q  179 aaacactaggtggtgagccttatttatactactctaggaaggctctccat 228  Q
    ||||||| ||||||||||||||||||||||||||||||||| | ||||||    
T  18966221 aaacacttggtggtgagccttatttatactactctaggaagacactccat 18966270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 9e-54; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 13774336 - 13774174
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 154  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||  |    
T  13774336 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatga 13774241  T
Q  155 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13774240 tg---------cttcagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctacatta 13774174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 45162364 - 45162202
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 154  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||| ||||  |    
T  45162364 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgtttgatga 45162269  T
Q  155 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||         |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  45162268 tg---------cttgagtatgccaaaacactaggtggtgagccttatttatactattctaggaagactctccatta 45162202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 54 - 230
Target Start/End: Original strand, 42468438 - 42468600
Alignment:
Q  54 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 153  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    |||||||||      
T  42468438 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttc----aatgcttgatg 42468533  T
Q  154 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||| |||||          |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42468534 atgcttcagtat----------ccaaaacactagatggtgagccttatttatactactctaggaaggctctccatta 42468600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 42470768 - 42470929
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 154  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||    |||||||||  |    
T  42470768 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttc----aatgcttgatga 42470863  T
Q  155 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||||| |||||          |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  42470864 tgcttcagtat----------ccaaaacactagatggtgagccttatttatactactctaggaaggctctccatta 42470929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 19429076 - 19429238
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagt-tatattacttgaatgattcaattaatgcttgact 153  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||                  
T  19429076 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagtatatattacttgaatgattca-------------- 19429161  T
Q  154 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||||||||||||||||| |||  | ||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  19429162 atgcttgagtatcttgaatatatctaaacacttggtggtgagccttatttatactactctaggtaggctctccatta 19429238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 50855771 - 50855857
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  50855771 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcgaggaaaagttatattacttgaatgattcaat 50855857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 13776630 - 13776546
Alignment:
Q  58 ctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaat 141  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  13776630 ctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattcaat 13776546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 230
Target Start/End: Complemental strand, 45167254 - 45167094
Alignment:
Q  57 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgactatg 156  Q
    ||||| |||||||||||||| ||  |||||| |||||||||||||||||||| ||| ||||||||||||| ||||||||||||||    | ||||  |||    
T  45167254 gctcatggacaaaaggaaagttaccgaaaatagagaaacactctaatattcttaaaaaaaagttatattatttgaatgattcaat----gtttgatgatg 45167159  T
Q  157 cttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||||||         ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  45167158 cttgagtat---------gccaaaacactaggtggtgagccttatttatactattctaggaagactctccatta 45167094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 50855868 - 50855922
Alignment:
Q  176 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  50855868 ccaaaacactaggtggtgaaccttatttatactactctaggaaggctctccatta 50855922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 13776512 - 13776472
Alignment:
Q  190 ggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  13776512 ggtgagccttatttatactactctaggaaggctctgcatta 13776472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 8739467 - 8739416
Alignment:
Q  179 aaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||||||| |||||| |||||| ||||||| |||||||||||||||| |||||    
T  8739467 aaacacttggtggtaagccttgtttatacaactctaggaaggctctacatta 8739416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 220
Target Start/End: Original strand, 24908156 - 24908198
Alignment:
Q  178 aaaacactaggtggtgagccttatttatactactctaggaagg 220  Q
    |||||||| |||||||| || ||||||||||||||||||||||    
T  24908156 aaaacacttggtggtgaaccctatttatactactctaggaagg 24908198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 8739562 - 8739501
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 116  Q
    ||||||||||| ||||||||||  |||||||||  |||||| ||||||| ||||||| ||||    
T  8739562 tggctcagggataaaaggaaagaaagagaaaataaagaaactctctaatgttctcaaggaaa 8739501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 31487069 - 31486906
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaattaatgcttgact 153  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||                  
T  31487069 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattca-------------- 31486984  T
Q  154 atgcttgagtatcttgagtatgccaaaacac-taggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31486983 atgcttgattatcttgagtatgccaaaacacttaggtggtgagccttatttatactactctaggaaggctctccatta 31486906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 53 - 230
Target Start/End: Complemental strand, 31489355 - 31489190
Alignment:
Q  53 tttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaattaatgcttga 151  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||                
T  31489355 tttggcttagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaaggaaaagttatattacttgaatcattca------------ 31489268  T
Q  152 ctatgcttgagtatcttgagtatgccaaaacac-taggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
      |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  31489267 --atgcttgattatcttgagtatgccaaaacacttaggtggtgagccttatttatactactttaggaaggctctccatta 31489190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 42275556 - 42275642
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42275556 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 42275642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 42277782 - 42277868
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42277782 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 42277868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 5164151 - 5164237
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  5164151 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgcttcaat 5164237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 8995076 - 8995156
Alignment:
Q  61 agggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8995076 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaagttatattacttgaatgattcaat 8995156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 141
Target Start/End: Complemental strand, 15730093 - 15730013
Alignment:
Q  61 agggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  15730093 agggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaataaaagttatattacttgaatgattcaat 15730013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 230
Target Start/End: Complemental strand, 23860188 - 23860026
Alignment:
Q  54 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgact 153  Q
    |||||||||||||||||||||| | | ||||||| ||||||| ||||||||||||||||||||  |  ||||| || |||| ||||||                
T  23860188 ttggctcagggacaaaaggaaaagcatagaaaatagagaaactctctaatattctcaaagaaagatattattatttaaatgtttcaat------------ 23860101  T
Q  154 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
      ||||||||||||||| ||| |  ||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  23860100 --gcttgagtatcttgaatatacgtaaacacttggtggtgagccttatttatactactctaggaaggctctacatta 23860026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 39816089 - 39816151
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaa 117  Q
    ||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  39816089 tggctcacggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaa 39816151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 29802067 - 29802003
Alignment:
Q  166 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| ||| ||||||    
T  29802067 cttgactatgcctaaacacttggtggtgagccttatttatactactctaggaagactccccatta 29802003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 34576612 - 34576665
Alignment:
Q  63 ggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 116  Q
    |||||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  34576612 ggacaaaaggtaaggtagagaaaatagagaaactctctaatattctcaaagaaa 34576665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 42275660 - 42275716
Alignment:
Q  174 tgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||| |||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  42275660 tgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacatta 42275716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 42277886 - 42277942
Alignment:
Q  174 tgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||| |||||||  |||||||||||||||||||||||||||||||| |||| |||||    
T  42277886 tgcctaaacacttagtggtgagccttatttatactactctaggaagactctacatta 42277942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 177 - 218
Target Start/End: Original strand, 8995169 - 8995210
Alignment:
Q  177 caaaacactaggtggtgagccttatttatactactctaggaa 218  Q
    ||||||||| ||||| ||||||||||||||||||||||||||    
T  8995169 caaaacacttggtggagagccttatttatactactctaggaa 8995210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 34576694 - 34576752
Alignment:
Q  173 atgccaaaacactaggtggtgagccttatttatactactc-taggaaggctctccatta 230  Q
    ||||| ||||||| | ||||||||||||||||||||| || |||||||||||| |||||    
T  34576694 atgcctaaacacttgatggtgagccttatttatactaatcttaggaaggctctacatta 34576752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 29833076 - 29833236
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 154  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||  |    
T  29833076 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattc----aatgcttgatga 29833171  T
Q  155 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29833172 t-----------ttgaatgtgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 29833236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 734579 - 734739
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 154  Q
    ||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||||||| |||||              |    
T  734579 tggctcagggacaaaaggaaaggtagagaaaatagagaaaca--ctaatattctcaaggaaaagttatattacttgaatcattca--------------a 734662  T
Q  155 tgcttgagtatcttgagtatg-ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  734663 tgcttgattatcttgagtatgaccaaaacactaggtggtgagccttatttatactattctaggaaggctctccatta 734739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 10911536 - 10911449
Alignment:
Q  54 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10911536 ttggctcagggacaaaaggaaaggtagataaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 10911449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 29834046 - 29833960
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29834046 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaaggattcaat 29833960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 55 - 230
Target Start/End: Complemental strand, 10909292 - 10909131
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaattaatgcttgact 153  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||    ||||||||| |    
T  10909292 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaacgaaaagttatattacttgaatgattc----aatgcttgatt 10909197  T
Q  154 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
     |           |||| | |||| |||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  10909196 ct-----------ttgaatgtgcctaaacacttagtggtgagccttatttatactactctaggaaggctctacatta 10909131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 8933549 - 8933635
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8933549 tggctcagggacaaaagaaaaggtagagaaaatagagaaacactctaatattttcaaagaaaagttatattacttgaatgattcaat 8933635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 13011881 - 13011795
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13011881 tggctcaggaacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttgaatgattcaat 13011795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 2409957 - 2410110
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaattaatgcttgact 153  Q
    ||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||  |||||||| ||||||| |||              |    
T  2409957 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctataatattctcaaagaaaatattatattatttgaatgtttc--------------t 2410042  T
Q  154 atgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||||||||      |||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2410043 atgcttga------tga---tgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 2410110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 2403835 - 2403915
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaa-gttatattacttgaatg 134  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||  |||||||| |||||||    
T  2403835 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaaatattatattatttgaatg 2403915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 29833949 - 29833895
Alignment:
Q  176 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29833949 ccaaaacactaggtagtgagccttatttatactactctaggaaggctctccatta 29833895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 2403931 - 2403988
Alignment:
Q  173 atgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||    
T  2403931 atgccaaaacactaagtggtgaaccttatttatactactctaggaagactctccatta 2403988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 179 - 230
Target Start/End: Complemental strand, 13011772 - 13011721
Alignment:
Q  179 aaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||||  ||||||||||||||||||||||||||||||||||||| |||||    
T  13011772 aaacacttagtggtgagccttatttatactactctaggaaggctctacatta 13011721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 8933648 - 8933701
Alignment:
Q  177 caaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||||||  ||||||||||||||||||||||||||||||||| ||| |||||    
T  8933648 caaaacacttagtggtgagccttatttatactactctaggaaggttctacatta 8933701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 10911431 - 10911375
Alignment:
Q  174 tgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||| |||||||  ||||||||||||||||||||||||||||||||| ||| |||||    
T  10911431 tgcctaaacacttagtggtgagccttatttatactactctaggaagggtctacatta 10911375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 18353894 - 18353850
Alignment:
Q  171 gtatgccaaaacactaggtggtgagccttatttatactactctag 215  Q
    ||||||||||||||| || |||||||| || ||||||||||||||    
T  18353894 gtatgccaaaacacttggaggtgagccctaattatactactctag 18353850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 11852175 - 11852326
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaattaatgcttgacta 154  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||| |    
T  11852175 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattca----atgcttgacga 11852270  T
Q  155 tgcttgagtatcttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |                    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11852271 t--------------------ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 11852326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 141
Target Start/End: Original strand, 11849916 - 11850003
Alignment:
Q  54 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11849916 ttggctcagggacaaaaggaaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattatttgaatgattcaat 11850003  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 23164254 - 23164340
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23164254 tggctcagggacaaaagggaaggtagagaaaatagagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 23164340  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 54 - 141
Target Start/End: Complemental strand, 22601088 - 22601000
Alignment:
Q  54 ttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaat 141  Q
    ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||    
T  22601088 ttggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaat 22601000  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 37215638 - 37215551
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatattacttgaatgattcaat 141  Q
    |||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||||||| ||||||| ||||||    
T  37215638 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcaaagaaaagattatattatttgaatgcttcaat 37215551  T

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Target: chr5; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 141
Target Start/End: Original strand, 1779222 - 1779303
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    |||||||||||||||||||||     ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1779222 tggctcagggacaaaaggaaa-----agaaaatagaggaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 1779303  T

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Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 11850014 - 11850068
Alignment:
Q  176 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11850014 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 11850068  T

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Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 133
Target Start/End: Complemental strand, 21743797 - 21743719
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaat 133  Q
    |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||| ||||||    
T  21743797 tggcccagggacaaaaggaaaggtagagaaaatagagaaactctctaatattctcaaagaaagtttatattatttgaat 21743719  T

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Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 37207948 - 37207895
Alignment:
Q  177 caaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37207948 caaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 37207895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 23164347 - 23164401
Alignment:
Q  176 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23164347 ccaaaacactaggtggtgggccttatttatactactctaggaaggctctccatta 23164401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 37208070 - 37207998
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaag-ttatatta 126  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |||||||| ||||||||    
T  37208070 tggctcagggacaaaagggaaggtagagaaaatagagaaactctctaatattctcgaagaaaagattatatta 37207998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 15469258 - 15469197
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 116  Q
    ||||||||||||||||||||||||| | ||||| ||||||| ||||||||||||||||||||    
T  15469258 tggctcagggacaaaaggaaaggtaaaaaaaatagagaaactctctaatattctcaaagaaa 15469197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 37215539 - 37215486
Alignment:
Q  177 caaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| |||||    
T  37215539 caaaacactatgtggtgagccttatttatactactctaggaaggctcttcatta 37215486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 22600989 - 22600935
Alignment:
Q  176 ccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  22600989 ccaaaacactaggtggtgagccttatttatactactttagcaagactctccatta 22600935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 21743709 - 21743651
Alignment:
Q  166 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctct 224  Q
    |||||||||||| || |||| ||||||||  ||||||||||||||||||||||||||||    
T  21743709 cttgagtatgcctaaccacttggtggtgaatcttatttatactactctaggaaggctct 21743651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 1779316 - 1779369
Alignment:
Q  177 caaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||||| |||||    
T  1779316 caaaacacttgttggtgagccttatttataccactctaggaaggctctacatta 1779369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 219
Target Start/End: Original strand, 1779181 - 1779221
Alignment:
Q  179 aaacactaggtggtgagccttatttatactactctaggaag 219  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  1779181 aaacacttggtggtgagccttatttatactactctaggaag 1779221  T

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Target: scaffold0008 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 88531 - 88445
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaatgattcaat 141  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  88531 tggctcagggacaaaaggaaaggtagagaaaatagagaaagactctaatattctcaaagaaaagttatattacttgaatgattcaat 88445  T

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Target: scaffold1361 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold1361
Description:

Target: scaffold1361; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 140 - 53
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaa-gaaaagttatattacttgaatgattcaat 141  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  140 tggctcagggacaaaaggaaaggtagagaaaatagagaaacactttaatattctcaaacgaaaagttatattacttgaatgattcaat 53  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 3707 - 3785
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaaagttatattacttgaat 133  Q
    ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||  |||||||| ||||||    
T  3707 tggctcagggacaaaaggaaaggtagagaaaatagagtaactctctaatattctcaaagaaagtttatattatttgaat 3785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 31741 - 31677
Alignment:
Q  166 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31741 cttgagtatgcctacacacttggtggtgagccttatttatactactctaggaaggctctccatta 31677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 29514 - 29453
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 116  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  29514 tggctcagggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaa 29453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 31829 - 31768
Alignment:
Q  55 tggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 116  Q
    ||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  31829 tggctcaaggacaaaaggaaaggtagagaaaatagagaaactctctaatgttctcaaagaaa 31768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 29426 - 29362
Alignment:
Q  166 cttgagtatgccaaaacactaggtggtgagccttatttatactactctaggaaggctctccatta 230  Q
    |||||||||||| |  |||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  29426 cttgagtatgcctacgcacttggtggtgagccttatttatactactctaggaagactctccatta 29362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 116
Target Start/End: Complemental strand, 20642359 - 20642300
Alignment:
Q  57 gctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 116  Q
    |||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||||    
T  20642359 gctcagggacaaaatgaaaggtagagaaaatagagaaattctctaatattctcaaagaaa 20642300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 64144 - 64082
Alignment:
Q  52 atttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 116  Q
    |||||| |||| ||||||| |||||||| ||||||| ||||||| ||  ||||||||||||||||    
T  64144 atttggatcagagacaaaatgaaaggtaaagaaaatagagaaaccct--aatattctcaaagaaa 64082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 71476 - 71414
Alignment:
Q  52 atttggctcagggacaaaaggaaaggtagagaaaattgagaaacactctaatattctcaaagaaa 116  Q
    |||||| |||| ||||||| |||||||| ||||||| ||||||| ||  ||||||||||||||||    
T  71476 atttggatcagagacaaaatgaaaggtaaagaaaatagagaaaccct--aatattctcaaagaaa 71414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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