View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1755_low_27 (Length: 238)
Name: NF1755_low_27
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_low_27 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15018912 - 15018691
Alignment:
| Q |
1 |
tacttgtcaataaggggatctatcatcattagtttcctatatattttgtataatttaggaagttactaattgtagctactgagtctgtactatttataaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15018912 |
tacttgtcaataaggggatctgtcatcattagtttcctatatattttgtataatttaggaagttactaattgtagctactgagtctgtactatttataaa |
15018813 |
T |
|
| Q |
101 |
ggaatatagaatgagagaagacatcaagccaaaattcattttgacagcactagtactagattatctgatctatcatcataaccttgtttataaatatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15018812 |
ggaatatagaatgagagaagacatcaagccaaaattcattttgacagcactagtactagattatctgatctatcatcataaccttgtttataaatatttt |
15018713 |
T |
|
| Q |
201 |
acaatacattctagtcgtatct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
15018712 |
acaatacattctagtcgtatct |
15018691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 15026030 - 15025809
Alignment:
| Q |
1 |
tacttgtcaataaggggatctatcatcattagtttcctatatattttgtataatttaggaagttactaattgtagctactgagtctgtactatttataaa |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15026030 |
tacttgtcaataaggggatctgtcatcattagtttcctatatattttgtataatttaggaagttactaattgtagctactgagtctgtactatttataaa |
15025931 |
T |
|
| Q |
101 |
ggaatatagaatgagagaagacatcaagccaaaattcattttgacagcactagtactagattatctgatctatcatcataaccttgtttataaatatttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15025930 |
ggaatatagaatgagagaagacatcaagccaaaattcattttgacagcactagtactagattatctgatctatcatcataaccttgtttataaatatttt |
15025831 |
T |
|
| Q |
201 |
acaatacattctagtcgtatct |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
15025830 |
acaatacattctagtcgtatct |
15025809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 90 - 222
Target Start/End: Complemental strand, 15044062 - 15043935
Alignment:
| Q |
90 |
ctatttataaaggaatatagaatgagagaagacatcaagccaaaattcattttgacagcactagtactagattatctgatctatcatcataaccttgttt |
189 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | || ||||| |
|
|
| T |
15044062 |
ctatttatgaaggaatatagaatgagagaagacatcaagccaaaattcattttgacagcactagtactagattatctg-----tcatcacagccatgttt |
15043968 |
T |
|
| Q |
190 |
ataaatattttacaatacattctagtcgtatct |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
15043967 |
ataaatattttacaatacattctagtcgtatct |
15043935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 15044207 - 15044134
Alignment:
| Q |
1 |
tacttgtcaataaggggatctatcatcattagtttcctatatattttgtataatttaggaagttactaattgta |
74 |
Q |
| |
|
||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15044207 |
tacttgtcaataaggggatctgttatgattagtttcctatatattttgtataatttaggaagttactaattgta |
15044134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 15004374 - 15004301
Alignment:
| Q |
1 |
tacttgtcaataaggggatctatcatcattagtttcctatatattttgtataatttaggaagttactaattgta |
74 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15004374 |
tacttgtcaataaggggatctgtcatcattagttttctttatattttgtataatttagtaagttactaattgta |
15004301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 67 - 139
Target Start/End: Complemental strand, 15004239 - 15004167
Alignment:
| Q |
67 |
taattgtagctactgagtctgtactatttataaaggaatatagaatgagagaagacatcaagccaaaattcat |
139 |
Q |
| |
|
|||||||||||||||||| ||||||||| || |||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15004239 |
taattgtagctactgagtttgtactattcatgaaggaatatataatgagagaagacatcaagccaaaattcat |
15004167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 222
Target Start/End: Complemental strand, 15004170 - 15004121
Alignment:
| Q |
173 |
tcatcataaccttgtttataaatattttacaatacattctagtcgtatct |
222 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
15004170 |
tcatcacaaccatgtttataaatattttacagtacattctggttgtatct |
15004121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University