View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755_low_28 (Length: 236)
Name: NF1755_low_28
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_low_28 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 40093939 - 40094174
Alignment:
| Q |
1 |
agtgttgcaaattttcaatgaagaagagtttaaacatgagnnnnnnnntcttgatctatgatgtgactgcgacattaatcccatctcacagataccacgt |
100 |
Q |
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| T |
40093939 |
agtgttgcaaattttcaatgaagaagagtttaaacatgagaaaaaaaatcttgatctatgatgtgattgagacattaatctcatctcacagataccacgt |
40094038 |
T |
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| Q |
101 |
gccacagtcgtttttgaaaccaaacggaaacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaaaacagctagga |
200 |
Q |
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| T |
40094039 |
gccacagtcgtttttgaaaccaaatggaaacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaaaacagatagga |
40094138 |
T |
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| Q |
201 |
agtgtgtgtgcccatgtatctgattctcacccacct |
236 |
Q |
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| T |
40094139 |
agtgtgtgtgcccatgtatctgattctcacccacct |
40094174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 40063308 - 40063542
Alignment:
| Q |
1 |
agtgttgcaaattttcaatgaagaagagtttaaacatgagnnnnnnnntcttgatctatgatgtgactgcgacattaatcccatctcacagataccacgt |
100 |
Q |
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| T |
40063308 |
agtgttgcaaattttcaatgaaaaagagtttaaacatga-aaaaaaaatcttgatctacgatgtgactgagacattaatcccatctcgcagataccatgt |
40063406 |
T |
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| Q |
101 |
gccacagtcgtttttgaaaccaaacggaaacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaaaacagctagga |
200 |
Q |
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| T |
40063407 |
accacgatcgtttttgaaaccaaacggcaacactcttgtattgtttgaggaaaatggcggtgatccaacacaaatagcttttgctacaaaacagctagaa |
40063506 |
T |
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| Q |
201 |
agtgtgtgtgcccatgtatctgattctcacccacct |
236 |
Q |
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| T |
40063507 |
agtttgtgtgcccatgtatctgattctcacccacct |
40063542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 49 - 236
Target Start/End: Original strand, 40081705 - 40081892
Alignment:
| Q |
49 |
tcttgatctatgatgtgactgcgacattaatcccatctcacagataccacgtgccacagtcgtttttgaaaccaaacggaaacactcttgtattgtttga |
148 |
Q |
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| T |
40081705 |
tcttgatctatgatgttactgagacaataatcgcatcttgcagataccatgtaccacgatcgtttttgaaaccaaacggcaacactcttgtattgtttga |
40081804 |
T |
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| Q |
149 |
ggaaagtggtggtgatccaacacaaatatcttttgctacaaaacagctaggaagtgtgtgtgcccatgtatctgattctcacccacct |
236 |
Q |
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| T |
40081805 |
ggaaaatggcggtgatccgacccaaatatcttttgctacaaaacagctggaaagtgtgtgttcacatgtatctgattctcacccacct |
40081892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 232
Target Start/End: Complemental strand, 22012391 - 22012288
Alignment:
| Q |
129 |
aacactcttgtattgtttgaggaaagtggtggtgatccaacacaaatatcttttgctacaaaacagctaggaagtgtgtgtgcccatgtatctgattctc |
228 |
Q |
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| T |
22012391 |
aacacttttgtattgtttgaggaaagcggaggcgaccctacaaaaatatcttttggtacaaaacagatagaaagtgtgtgttcacatgtaactgaatctc |
22012292 |
T |
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| Q |
229 |
accc |
232 |
Q |
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| T |
22012291 |
accc |
22012288 |
T |
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