View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755_low_4 (Length: 542)
Name: NF1755_low_4
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 40094525 - 40094006
Alignment:
| Q |
1 |
tattactgcttgtgtttaaatactatgagttgattagtttattttctattattctcaccagctcaagcaacctactcacatataagtaaactatgagtca |
100 |
Q |
| |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| |
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| T |
40094525 |
tattactacctgtgtttaaatactatgagttgattagtttattttctattattctcaccaactcaagcaacctactcacatataattaaactaagagtca |
40094426 |
T |
|
| Q |
101 |
tactcaacataaagtgaagcataacaaattagaaagggaacaggaatccagataaacaccttctttacaattgacagtgccttattgctgctgcagcgtc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40094425 |
tactcaacataaagtgaaccataacaaattagaaagggaacatgaatccagataaacaccttctttacaattgacagtgtcttattgctgctgcagcgtc |
40094326 |
T |
|
| Q |
201 |
cgcggtagaagtttccacacgtccctagtggtgttccatagcttgcaaatttgatggaagagattacctgattatgattaggacagttgagcaacagtgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40094325 |
cgcggtagaagtttccacacgtccctagtggtgttccatagcttgcaaatttgatggaagatattacctgattatgattaggacagttgagcaacagtgc |
40094226 |
T |
|
| Q |
301 |
aggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgcacacaaactttctagctgtttt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||| |
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| T |
40094225 |
aggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgggcacacacacttcctatctgtttt |
40094126 |
T |
|
| Q |
401 |
gtagcaaaagctatttgtgttggatcaccgccattttcctcaaacaatataagagtgttgccgtttggtttcaaaaacgatcgtggtacatggtatctgc |
500 |
Q |
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|||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||||||| || ||||||||||||||||| |||| || ||||||||| |
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| T |
40094125 |
gtagcaaaagatatttgtgttggatcaccaccactttcctcaaacaatacaagagtgtttccatttggtttcaaaaacgactgtggcacgtggtatctgt |
40094026 |
T |
|
| Q |
501 |
gagatgggattaatgtctca |
520 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
40094025 |
gagatgagattaatgtctca |
40094006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 112 - 522
Target Start/End: Complemental strand, 40063782 - 40063372
Alignment:
| Q |
112 |
aagtgaagcataacaaattagaaagggaacaggaatccagataaacaccttctttacaattgacagtgccttattgctgctgcagcgtccgcggtagaag |
211 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40063782 |
aagtgaaacataacaaattagcaagggaacaagaattcagataaacaccttctttacaattgacagcgccttattgctgctgcagcgtccgcggtagaag |
40063683 |
T |
|
| Q |
212 |
tttccacacgtccctagtggtgttccatagcttgcaaatttgatggaagagattacctgattatgattaggacagttgagcaacagtgcaggccctactt |
311 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063682 |
tttccgcatgtccccagtggtgttccatagcttgcaaatttgatggaaaagattacctgattatgattaggacagttgagcaacagtgcaggccctactt |
40063583 |
T |
|
| Q |
312 |
ttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgcacacaaactttctagctgttttgtagcaaaagc |
411 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40063582 |
ttccccatgatgttgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgggcacacaaactttctagctgttttgtagcaaaagc |
40063483 |
T |
|
| Q |
412 |
tatttgtgttggatcaccgccattttcctcaaacaatataagagtgttgccgtttggtttcaaaaacgatcgtggtacatggtatctgcgagatgggatt |
511 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40063482 |
tatttgtgttggatcaccgccattttcctcaaacaatacaagagtgttgccgtttggtttcaaaaacgatcgtggtacatggtatctgcgagatgggatt |
40063383 |
T |
|
| Q |
512 |
aatgtctcagt |
522 |
Q |
| |
|
||||||||||| |
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|
| T |
40063382 |
aatgtctcagt |
40063372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Complemental strand, 40082257 - 40081722
Alignment:
| Q |
1 |
tattactgcttgtgtttaaatactatgagttgattagtttattttctattattctcaccagctcaagcaacctactcacatataagtaaactatgagtca |
100 |
Q |
| |
|
||||||||||||||||||||||| || | ||| |||||| ||||||||||||||| | ||||||||||||||||||||||||| |||||||||| || || |
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|
| T |
40082257 |
tattactgcttgtgtttaaatacaattaattggttagttgattttctattattctgatcagctcaagcaacctactcacatatcagtaaactattagcca |
40082158 |
T |
|
| Q |
101 |
tactcaacata--------------aagtgaagcataacaaattagaaagggaacaggaatccagataaacaccttctttacaattgacagtgccttatt |
186 |
Q |
| |
|
| ||||||| | ||||| ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||| |||||||| |
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| T |
40082157 |
tggccaacatagtcaatctaaaccaatgtgaaacataacaaattagtaagggaacaggagttcagataaacaccttctttacaattgacagcgccttatt |
40082058 |
T |
|
| Q |
187 |
gctgctgcagcgtccgcggtagaagtttccacacgtccctagtggtgttccatagcttgcaaatttgatggaagagattacctgattatgattaggacag |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
40082057 |
gctgctgcagcgtccgcggtagaagtttccacacgtccctaaaggtgttccatagcttgcaaatttgatggatgaaattacctgattatgattaggacaa |
40081958 |
T |
|
| Q |
287 |
ttgagcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgcacacaaac |
386 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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|
| T |
40081957 |
ctgagcaacagagcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgaacacacac |
40081858 |
T |
|
| Q |
387 |
tttctagctgttttgtagcaaaagctatttgtgttggatcaccgccattttcctcaaacaatataagagtgttgccgtttggtttcaaaaacgatcgtgg |
486 |
Q |
| |
|
|||| ||||||||||||||||||| |||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
40081857 |
tttccagctgttttgtagcaaaagatatttgggtcggatcaccgccattttcctcaaacaatacaagagtgttgccgtttggtttcaaaaacgatcgtgg |
40081758 |
T |
|
| Q |
487 |
tacatggtatctgcgagatgggattaatgtctcagt |
522 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
40081757 |
tacatggtatctgcaagatgcgattattgtctcagt |
40081722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 183 - 461
Target Start/End: Original strand, 22012115 - 22012393
Alignment:
| Q |
183 |
tattgctgctgcagcgtccgcggtagaagtttccacacgtccctagtggtgttccatagcttgcaaatttgatggaagagattacctgattatgattagg |
282 |
Q |
| |
|
||||||||||||||| |||| ||| | |||||||||| ||||| | || |||||| ||||||||||||| ||||||||||| |||||||| ||| ||| |
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|
| T |
22012115 |
tattgctgctgcagcttccgtggttgtagtttccacaagtcccacgaggcgttccaaagcttgcaaatttaatggaagagatcgcctgattaggataagg |
22012214 |
T |
|
| Q |
283 |
acagttgagcaacagtgcaggccctacttttccccctgattctgtatcttggttccacaagtctatttgaggtgggtgagaatcagatacatgtgcacac |
382 |
Q |
| |
|
|| | || ||||| |||| ||||| |||| ||||||||| || ||||| ||||| | || |||||||| |||| |||||||| |||| |
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|
| T |
22012215 |
gcattccagtgacagtacaggacctacctttctttctgattctgcattcgaattccatgtgtctacaggtggagggtgagattcagttacatgtgaacac |
22012314 |
T |
|
| Q |
383 |
aaactttctagctgttttgtagcaaaagctatttgtgttggatcaccgccattttcctcaaacaatataagagtgttgc |
461 |
Q |
| |
|
| |||||||| |||||||||| |||||| ||||| ||| || || || || ||||||||||||||| || |||||||| |
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|
| T |
22012315 |
acactttctatctgttttgtaccaaaagatatttttgtagggtcgcctccgctttcctcaaacaatacaaaagtgttgc |
22012393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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