View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755_low_5 (Length: 537)
Name: NF1755_low_5
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_low_5 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 507; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 15 - 537
Target Start/End: Original strand, 40093424 - 40093946
Alignment:
| Q |
15 |
atcaggtcagtcttcacttttgatcgaagactatttattagtcttacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093424 |
atcaggtcagtcttcacttttgatcgaagactatttgttagtcttacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatt |
40093523 |
T |
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| Q |
115 |
taggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaattta |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093524 |
taggtctctctagtggaagttccggagcgtggaattcaaagactactttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaattta |
40093623 |
T |
|
| Q |
215 |
ttgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatgtcatgcatgttgcattag |
314 |
Q |
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| T |
40093624 |
ttgtttcccttgatataagttatggaatttcaaattaaaagaacgccactatatgaaaaatgttttttgctactaaccaatgtcatgcatgttgcattag |
40093723 |
T |
|
| Q |
315 |
acaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgat |
414 |
Q |
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| T |
40093724 |
acaaactttgatgctccatccggcagtaatccagttgtgattgacttcacagggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgat |
40093823 |
T |
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| Q |
415 |
actggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaacc |
514 |
Q |
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| T |
40093824 |
actggcctacatatgttgcttcaaatgtcgattgcacagactcatgcaactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaacc |
40093923 |
T |
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| Q |
515 |
atcacagacattgtaagtgttgc |
537 |
Q |
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| T |
40093924 |
atcacagacattgtaagtgttgc |
40093946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 65 - 537
Target Start/End: Original strand, 40062843 - 40063315
Alignment:
| Q |
65 |
gttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagactactttc |
164 |
Q |
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| T |
40062843 |
gttaatggagttaattctattgatacaggttggcctaaaaggtgaagatttaggtctgtccagtggaagttccgaaggttggaactcacagtctactttc |
40062942 |
T |
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| Q |
165 |
cctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaacgccact |
264 |
Q |
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| T |
40062943 |
cctaagaatcaaccattgatttggtacaaggtaattttattttcaatttattgtttccctttatataagttatggaatttcaaattaaaagaatgccact |
40063042 |
T |
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| Q |
265 |
atatgaaaaatgttttttgctactaaccaatgtcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcac |
364 |
Q |
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| T |
40063043 |
atatgaaaaatgttttttggtactaaccaatgtcatacatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcac |
40063142 |
T |
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| Q |
365 |
ggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaac |
464 |
Q |
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| T |
40063143 |
ggggatgggaaaaggtgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaac |
40063242 |
T |
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| Q |
465 |
tacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgc |
537 |
Q |
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| T |
40063243 |
tacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgc |
40063315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 59 - 537
Target Start/End: Original strand, 40081187 - 40081666
Alignment:
| Q |
59 |
tacatagttaatggagttaattcttttgatacaggttggcctaaaaggtgaagatttaggtctctctagtggaagttccggagcgtggaattcaaagact |
158 |
Q |
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||||| |||||||||||||||| ||| ||||||| ||||||||||||| |||||||||||||| |||||||||||||| |||| |||||||||| || || |
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| T |
40081187 |
tacattgttaatggagttaattttttcgatacagattggcctaaaaggcgaagatttaggtctgtctagtggaagttctggagggtggaattcacagtct |
40081286 |
T |
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| Q |
159 |
actttccctaagaaacaaccattgatttggtacaaggtaatttaattttcaatttattgtttcccttgatataagttatggaatttcaaattaaaagaac |
258 |
Q |
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| T |
40081287 |
acttaccctaagaaccaaccattggtttggtacaaggtagttttattttcaatttattgtttcccttgatataagtaagggaatttcaaattaaggaaat |
40081386 |
T |
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| Q |
259 |
gccactatatgaaaaatgtttt-ttgctactaaccaatgtcatgcatgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattg |
357 |
Q |
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| T |
40081387 |
gccactatatgaaaaatgtttttttgctactaaccaatgtaatacatgttgcactagacaaactttgatgctccatccggcagtaatccagttgcgattg |
40081486 |
T |
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| Q |
358 |
acttcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactc |
457 |
Q |
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| T |
40081487 |
acttcacggggatgggaaaaggtgaggcttgggtaaatggacaaagcattgggcgatactggcctacatatgtcgcttcaaatgccggttgcacagactc |
40081586 |
T |
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| Q |
458 |
atgcaactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaaaccatcacagacattgtaagtgttgc |
537 |
Q |
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| T |
40081587 |
atgcaactatagaggaccttatacttcatctaaatgtcgcaagaactgtggaaaaccgtcacagacattgtaagtgttgc |
40081666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 312 - 530
Target Start/End: Complemental strand, 22012756 - 22012538
Alignment:
| Q |
312 |
tagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggc |
411 |
Q |
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||||| ||||||| |||||| ||||| ||||| || ||||| || |||||||||||||||||||||||||| |||||||| || ||||| |||||||||| |
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| T |
22012756 |
tagacgaactttgttgctccctccggaagtaacccggttgcaatcgacttcacggggatgggaaaaggcgaagcttgggtgaacggacagagcattgggc |
22012657 |
T |
|
| Q |
412 |
gatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggaccttttactcaaaccaaatgtcacatgaattgtggaaa |
511 |
Q |
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|||||||||| ||||| | || | ||| | | || || ||||||||||| || |||||| | | | || | ||||||| | || |||||||||||| |
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| T |
22012656 |
gatactggccaacatacatctctccgaattctggctgtactgactcatgcaattatagaggaacatattctgcatccaaatgcctcaagaattgtggaaa |
22012557 |
T |
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| Q |
512 |
accatcacagacattgtaa |
530 |
Q |
| |
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||||||||||||||||||| |
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| T |
22012556 |
accatcacagacattgtaa |
22012538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 369 - 409
Target Start/End: Complemental strand, 44356214 - 44356174
Alignment:
| Q |
369 |
atgggaaaaggcgaggcttgggtaaatggacaaagcattgg |
409 |
Q |
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|||| |||||| || |||||||||||||||||||||||||| |
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| T |
44356214 |
atggcaaaaggtgaagcttgggtaaatggacaaagcattgg |
44356174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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