View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755_low_8 (Length: 474)
Name: NF1755_low_8
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 465
Target Start/End: Complemental strand, 504742 - 504290
Alignment:
| Q |
16 |
aataattgggtggtttcactcactacttcctatatcacccacatacccatcaacatgttgcttattgctaatgagagtgaagtatatcagcaacattgtt |
115 |
Q |
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| T |
504742 |
aataattgggtggtttcactcactacttcctatatcacccacatacccatcaaaattttgcttattgctaatgagagtgaagtatatcagcaacattgtt |
504643 |
T |
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| Q |
116 |
cccatgcttgacctgtttgagaatcaaataaattaaccaaaaatggaaaatagaaaccagagtaattaatgcaacaataaaatgcatatattattaggtt |
215 |
Q |
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| T |
504642 |
cccatgcttgacctgtttgagaatcaaataaattaaccaaaaatggaaaatagaaaccagagtaattaatgcaacaataaaatgcatatattattaggtt |
504543 |
T |
|
| Q |
216 |
aatcttacaaggtggcaaagaaaatgagaacccttttaggatcaagtgtccatgaagaagatcgtatgaaactatttcggcgagttaatctgctttcacc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
504542 |
aatcttacaaggtggcaaagaaaatgagaacccttttaggatcaagtgtccatgaagaagatcgtatgaaactatttcggcgagttaatctgctttcacc |
504443 |
T |
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| Q |
316 |
agtggtggcggtggtggtgccgatgatgttaatctgatgatgattgtgtgggttgatggaatgatccggggaccccgctgccattgccgttggcgtacat |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
504442 |
ggtggtggcggtggtggtgccgatgatgttaatctgatgatgattgtgtgggttgatggaatgatccggggaccccgctgccattgccgttggcgtacat |
504343 |
T |
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| Q |
416 |
gaccctgccatagtagttacaacacttcaa---tgatacacacaccttcatct |
465 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
504342 |
gaccctgccatagtagttacaacacttcaatgatgatacacacaccttcatct |
504290 |
T |
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