View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1755_low_9 (Length: 456)
Name: NF1755_low_9
Description: NF1755
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1755_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 28667133 - 28666689
Alignment:
| Q |
1 |
ccctagctagcacgaggtaacagctcccagccaaagccctgcgcagattctgtgtttgtgtccacgtgaattcgatagag--tgaggttgtggatcagcc |
98 |
Q |
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| T |
28667133 |
ccctagctagcgcgaggatacagctccca--caaagccctgcgcagattctgtgtttgtgtccacgtgaatttgatagagagtgaagttgtggattagcc |
28667036 |
T |
|
| Q |
99 |
tttgtaacaccatataaacagtattaacatggctgcaattacgcccaattg-tcgaattccatcgtgtaacaaacagttgaggtcactgtgactgagata |
197 |
Q |
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| T |
28667035 |
tttgtaacaccatataaacagtattaacatggctgcaattacacccaattggtcgaattcgatcgtgtaacaaacagttgaggtcactgtgacagagata |
28666936 |
T |
|
| Q |
198 |
aggtgaggaggagccacgagcaagcagagaaacggtcggaacggagcaaaacatagctgctcagccggcgaaaccctagcagacattcttctttcaaatt |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
28666935 |
aggtgaggaggagccacgagcaagcagagaaacggtcggaacggagcaaaacatagttgctcagccgacgaaaccctagcagacatccttctttcaaatt |
28666836 |
T |
|
| Q |
298 |
gagtttgtactaagacactaccttattcttctcctactatatgtcgttatgtattccattgttgttaccaccaacaaatcaaatatcaataaagcgtgac |
397 |
Q |
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| T |
28666835 |
gagtttgtactaagacactaccttattcttctcctactatatgtcgttatgtgttccattgtttttaccaccaacaaatcaaatatcaataaagtgtgaa |
28666736 |
T |
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| Q |
398 |
tgtaatttgattcttactgtttgatgatgatatgttggcatgagaat |
444 |
Q |
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| T |
28666735 |
cgtaatttgattcttactgtttgatgatgatatgttggcatgagaat |
28666689 |
T |
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Back To:
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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 132 - 216
Target Start/End: Original strand, 10327900 - 10327984
Alignment:
| Q |
132 |
tgcaattacgcccaattgtcgaattccatcgtgtaacaaacagttgaggtcactgtgactgagataaggtgaggaggagccacga |
216 |
Q |
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||||||| | ||||||| |||||||| || || ||||||||||||||||||||| | || || |||||| ||||||||||||| |
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| T |
10327900 |
tgcaatttcacccaattttcgaattcaatggtataacaaacagttgaggtcactttcacatagccaaggtggggaggagccacga |
10327984 |
T |
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