View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17560_high_10 (Length: 255)
Name: NF17560_high_10
Description: NF17560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17560_high_10 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 11551170 - 11550914
Alignment:
| Q |
7 |
cgaagtacttgcagcgaaatgaagatccactggtgatcaatagtcattagtcattttgataccaaatatgtaaaatgaaaagcatgtgccccaaatcatt |
106 |
Q |
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| T |
11551170 |
cgaagtaattgcagcgaaatgaagatccactggtgatcaatagtcattagtcattttgataccaaatatgtaaaatgaaaagcatgtgccccaaatcatt |
11551071 |
T |
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| Q |
107 |
ttgagtta--------taactcagtatgagacaatatcatagcaataccaaataaaaatatgaactacatatatattcataaaattaaaagccaactcaa |
198 |
Q |
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| T |
11551070 |
ttgagttaaatacttataactcagtatgagacaatatcatagcaatgccaaataaaaatatgaactacatatatattcataaaattaaaagccaactcaa |
11550971 |
T |
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| Q |
199 |
tcattttgttgaaccaccatcggtaaaactacttgcatactcttccagaccaacaaa |
255 |
Q |
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| T |
11550970 |
tcattttgtcgaaccaccattgataaaactatttgcatactcttccagaccaacaaa |
11550914 |
T |
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Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 149 - 247
Target Start/End: Original strand, 11562218 - 11562316
Alignment:
| Q |
149 |
aataaaaatatgaactacatatatattcataaaattaaaagccaactcaatcattttgttgaaccaccatcggtaaaactacttgcatactcttccaga |
247 |
Q |
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| T |
11562218 |
aataaaaatatgaactacatatagattcataaaataaaaagcaaactcaatcattttgtctaaccaccattgataaaactacttgcatattcttccaga |
11562316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 228
Target Start/End: Complemental strand, 11546264 - 11546195
Alignment:
| Q |
159 |
tgaactacatatatattcataaaattaaaagccaactcaatcattttgttgaaccaccatcggtaaaact |
228 |
Q |
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| T |
11546264 |
tgaaatacatatagattcataaaattaaaagccaactcaatcattttgtctaaccaccatcaataaaact |
11546195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 11546316 - 11546264
Alignment:
| Q |
60 |
ttttgataccaaatatgtaaaatgaaaagcatgtgccccaaatcattttgagt |
112 |
Q |
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| T |
11546316 |
ttttgatacgaaatatgtaaaatgaaaagcatgttccccaaatcatttcgagt |
11546264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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