View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17560_high_11 (Length: 252)
Name: NF17560_high_11
Description: NF17560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17560_high_11 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 11550681 - 11550916
Alignment:
| Q |
17 |
agatgcaggttgttacgctgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccaccc |
116 |
Q |
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| T |
11550681 |
agatgcaggttgttacgctgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccaccc |
11550780 |
T |
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| Q |
117 |
taatcttttcaacttagtagaattaattaaagatggcaatgtttgtctggtcacagctgacaacaagactatatgaaacatgaacttttaggatatgaat |
216 |
Q |
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| T |
11550781 |
taatcttttcaacttagtagaattaattaaagatggcaatgtttgtctggtcacagctgacaacaagactatatgaaacatgaacttttaggatatgaat |
11550880 |
T |
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| Q |
217 |
attggtactttgttctgcttttactctatttatttt |
252 |
Q |
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| T |
11550881 |
attggtactttgttctgcttttactctatttatttt |
11550916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 11562554 - 11562324
Alignment:
| Q |
21 |
gcaggttgttacgctgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccaccctaat |
120 |
Q |
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| T |
11562554 |
gcaggttgttaccgtgaagccacttgacagaaatggatttcaacagaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccaccctaat |
11562455 |
T |
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| Q |
121 |
cttttcaacttagtagaattaattaaagatggcaatgtttgtctggtcacagctgac-aacaagactatatgaaacatgaacttttaggatatgaatatt |
219 |
Q |
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| T |
11562454 |
cttttcaacttagtagaactaattaaagatggcaaggtttgtctggtcacagttgacaaacaagaccatatgaaacatgaacttttaggatatggatgtt |
11562355 |
T |
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| Q |
220 |
ggtactttgttctgcttttactctatttatt |
250 |
Q |
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| T |
11562354 |
ggtactttgttctgcttttactctatttatt |
11562324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 11545995 - 11546180
Alignment:
| Q |
21 |
gcaggttgttacgctgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgaaccaccctaat |
120 |
Q |
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| T |
11545995 |
gcaggttgttacggtgaagccacttgacagaaatggatttcaacggaacaaggaatttctcgcagagtttttagctttttgtcttttgcaccaccttaat |
11546094 |
T |
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| Q |
121 |
cttttcaacttagtagaattaattaaagatggcaatgtttgtctggtcacagctgacaacaagactatatgaaacatgaactttta |
206 |
Q |
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| T |
11546095 |
cttttcaacttagtagaattaattaaagatggcaaggtttgtccggtcacagttgacaacaagaccatatgaattatgaactttta |
11546180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 1188264 - 1188208
Alignment:
| Q |
194 |
acatgaacttttaggatatgaatattggtactttgttctgcttttactctatttatt |
250 |
Q |
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| T |
1188264 |
acatgaacttttaggatatcaaatttggtactttgttctccttttacttgatttatt |
1188208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 241
Target Start/End: Original strand, 27472137 - 27472189
Alignment:
| Q |
189 |
atgaaacatgaacttttaggatatgaatattggtactttgttctgcttttact |
241 |
Q |
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| T |
27472137 |
atgaaacatgatttgttaggatattgatgttggtactttgttctgcttttact |
27472189 |
T |
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