View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17560_high_3 (Length: 486)
Name: NF17560_high_3
Description: NF17560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17560_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 12 - 470
Target Start/End: Original strand, 39329958 - 39330418
Alignment:
| Q |
12 |
atgaaatggatcaaattattaacgcaatgtggggctcttagttatacatccatacacatat--acatgagattttaagctatgcacgtgtacttagtgtt |
109 |
Q |
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| T |
39329958 |
atgaaatggatcaaattattaacccaatgtggggctcttagttatacatccatacacatatatacatgagattttaagctatgcacgtgtacttagtgtt |
39330057 |
T |
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| Q |
110 |
tagtgtgacgctaatagtggacataattaattgctcatatatgacataggacatcctttagtccatataaaacaaaaaggacaattatgtgtcatcatta |
209 |
Q |
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| T |
39330058 |
tagtgtgacgctaatagtggacataattaattgctcatatatgacataggacatcctttagtccatataaaacaaaaaggacaattatgtgtcatcatta |
39330157 |
T |
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| Q |
210 |
tcataattgttgttatggctatagtacaagataaagataaatgattgaactaattacttagacaaattaggaaacaccctcagtgatcctttggttaact |
309 |
Q |
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| T |
39330158 |
tcataattgttgttatggctatagtacaagataaagataaatgattgaactaattacttagacaaattaggaaacaccctcagtgatcctttggttaact |
39330257 |
T |
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| Q |
310 |
ttctagcttgtttttcagctaatcacatagtaactttttaattgctggttaaaaaatagtaccccttaaatgacaccatactcatgaccagaagcagaag |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
39330258 |
ttctagcttgtttttcagctaatcacatagtaactttttaattgctggttaaaaaatagtaccccttaaatgacaccagaatcatgaccagaagcagaag |
39330357 |
T |
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| Q |
410 |
gtattcagataaattcacataacgtgaaccacaattttatcattcatatcatatcaatggt |
470 |
Q |
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| T |
39330358 |
gtattcagataaattcacataacgtgaaccacaattttatcattcctatcatatcaatggt |
39330418 |
T |
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