View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17560_high_4 (Length: 392)
Name: NF17560_high_4
Description: NF17560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17560_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 39 - 324
Target Start/End: Complemental strand, 54818201 - 54817901
Alignment:
| Q |
39 |
acctatatgtcaatgaagaaagataagtagtttctttgaagtcataataagcagttgaaatggacacattggtccactctccatttcttgatgaggaatc |
138 |
Q |
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| T |
54818201 |
acctatatgtcaatgaagaaagataagtagtttctttgaagtcataataagcagttgaaattgacacattggtccactctccatttcttgatgaggaagc |
54818102 |
T |
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| Q |
139 |
aagcattcactctctct------------tggattacgataatattcgagaagaaacggtcatcctatctattgtcataggattctgtttgacacgtgta |
226 |
Q |
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| T |
54818101 |
aagcattctctctctctctctctctctcttggattacgataatattcgagaagaaacggtcatcctatctattgtcataggattctgtttgacacgtgta |
54818002 |
T |
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| Q |
227 |
aggaccagacatctccacgtcaaaaagctccaaacccacgttattcttttttacaga-----aaagaaaaaccgaattcatttccaagttccaacaccaa |
321 |
Q |
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| T |
54818001 |
aggaccagacatctccacgtc--aaagctccaaacccacgttattcttttttacaaaagcacacagaaaaacctaattcatttccaagttccaacaccaa |
54817904 |
T |
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| Q |
322 |
aac |
324 |
Q |
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||| |
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| T |
54817903 |
aac |
54817901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 349 - 379
Target Start/End: Complemental strand, 54817906 - 54817876
Alignment:
| Q |
349 |
caaaacacgaagaaacccttttgttctgttc |
379 |
Q |
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| T |
54817906 |
caaaacacgaagaaacccttttgttctgttc |
54817876 |
T |
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