View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17560_high_5 (Length: 379)
Name: NF17560_high_5
Description: NF17560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17560_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 3e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 8233142 - 8232954
Alignment:
| Q |
8 |
aaattatactgcaattgtttaatgtgagacaagaaatatgtgttggaaatatcattactgcccaataccacaaggaaaagactatttgccaagatgaagt |
107 |
Q |
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| T |
8233142 |
aaatcatactgcaattgtctaatgtgagacaagaaatatgtgttggaaatatcattactgcccaataccacaaggaaaagactatttgccaagatgaagt |
8233043 |
T |
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| Q |
108 |
ttgttctgtcttctccaacaagttctcttaattttcctatgtattctttgaacaagtctagttgaccagataatgatattgctgactga |
196 |
Q |
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| T |
8233042 |
ttgttctgtcttctccaacaagttctcttaattttcctatgtattctttgaacaagtctagttgaccagatagtgatattgctgactga |
8232954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 269 - 363
Target Start/End: Complemental strand, 8232886 - 8232793
Alignment:
| Q |
269 |
gaacaagttaagtttttaatggtaactttaattttgaaaagaaattaagggtttaaaatatat----gtaccgcagtttgagatgtcaaaggatcaaat |
363 |
Q |
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| T |
8232886 |
gaacaagttaagtttttaatggtaacttt-----tgaaaagaaattaagggtttaaaatatatatatgtaccgcagtttgagatgtcaaaggatcaaat |
8232793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 83 - 196
Target Start/End: Complemental strand, 8289014 - 8288901
Alignment:
| Q |
83 |
aaaagactatttgccaagatgaagtttgttctgtcttctccaacaagttctcttaattttcctatgtattctttgaacaagtctagttgaccagataatg |
182 |
Q |
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| T |
8289014 |
aaaagactattggccagtatgaagtttgttctttcctcaccaacaatgcctttcaacttcccaatgtattctttgaacatgtctagttgagcagataatg |
8288915 |
T |
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| Q |
183 |
atattgctgactga |
196 |
Q |
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| T |
8288914 |
gtattactgactga |
8288901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 126
Target Start/End: Complemental strand, 8253444 - 8253354
Alignment:
| Q |
36 |
acaagaaatatgtgttggaaatatcattactgcccaataccacaaggaaaagactatttgccaagatgaagtttgttctgtcttctccaac |
126 |
Q |
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| T |
8253444 |
acaagaagtatgtgttagaaatatcattgcttcctactagcacaaaataaatactattggctaagatgaagtttgttctatcttcaccaac |
8253354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 8243810 - 8243717
Alignment:
| Q |
32 |
tgagacaagaaatatgtgttggaaatatcattactgcccaataccacaaggaaaagactatttgccaagatgaagtttgttctgtcttctccaa |
125 |
Q |
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| T |
8243810 |
tgagacaagtagtacgtgttagaaatgtcattgcttcctagtaccacaagaaaaagactattggctaagatgaaatttgctctatcttcaccaa |
8243717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 11838536 - 11838690
Alignment:
| Q |
41 |
aaatatgtgttggaaatatcattactgcccaataccacaaggaaaagactatttgccaagatgaagtttgttctgtcttctccaacaagttctcttaatt |
140 |
Q |
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| T |
11838536 |
aaatatgtattggaaatgtcgttacttccttgaaccacaaggaaaacactgttggctaggatgaaattttttctaccctctccaacaattccttttagct |
11838635 |
T |
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| Q |
141 |
ttcctatgtattctttgaacaagtctagttgaccagataatgatattgctgactg |
195 |
Q |
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| T |
11838636 |
ttcctatgtattctttgaacaaaattatttgaccggacaacgatatagctgactg |
11838690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 195
Target Start/End: Complemental strand, 53276797 - 53276643
Alignment:
| Q |
41 |
aaatatgtgttggaaatatcattactgcccaataccacaaggaaaagactatttgccaagatgaagtttgttctgtcttctccaacaagttctcttaatt |
140 |
Q |
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| T |
53276797 |
aaatatgtattggaaatgtcgttacttccttgaaccacaaggaaaacactgttggctaggatgaaattttttctaccctctccaacaattccttttagct |
53276698 |
T |
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| Q |
141 |
ttcctatgtattctttgaacaagtctagttgaccagataatgatattgctgactg |
195 |
Q |
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|||||||||||||||||||||| || |||||| || || ||||| |||||||| |
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| T |
53276697 |
ttcctatgtattctttgaacaaaattatttgaccggacaacgatatagctgactg |
53276643 |
T |
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