View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17560_high_6 (Length: 369)
Name: NF17560_high_6
Description: NF17560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17560_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 32018865 - 32019217
Alignment:
| Q |
1 |
ttgttccaaagcaaatggatggacaaagtgaaaataccatgaatatcctcgggaaatcatgtcggaaaataccataaattccgattatgaaagctgatat |
100 |
Q |
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| T |
32018865 |
ttgttccaaagcaaatggatggacaaagtgaaaataccatgaatatcctcgggaaatcatgtcggaaaataccataaattccgattatgaaagctgatat |
32018964 |
T |
|
| Q |
101 |
tagtgtcacagtccccaaaatgatgc-tgccctcatcaaacactcaaagtaatcgatgtaaggaggcctagaacaaagcaaaatcagatatagataatgt |
199 |
Q |
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| T |
32018965 |
tagtgtcacagtccccaaaatgatgcctaccctcatcaaacactcaaagtaattgatgtaaggagccctagaacaaagcaaaatcagatatagataatgt |
32019064 |
T |
|
| Q |
200 |
taatatgggaaagcaacatatgcataaagaaattaatggtgaaaaacaaacttacatatcacgggcgtcatagaccggagccgagtctatagtatgcttc |
299 |
Q |
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| T |
32019065 |
taatatgggaaagcaacatatgcataaagaaattaatggtgaaaaacaaacttacatatcacgggcgtcatagaccggagccgagtctatagtatgcttc |
32019164 |
T |
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| Q |
300 |
tgttcaacttcgataaccagggcttctgtcgaaggtgcatgcgtcccatggct |
352 |
Q |
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| T |
32019165 |
tgttcaacttcgataaccagggcttttgtcgaaggtgcatgcgtcccatggct |
32019217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 254
Target Start/End: Complemental strand, 39823287 - 39823243
Alignment:
| Q |
210 |
aagcaacatatgcataaagaaattaatggtgaaaaacaaacttac |
254 |
Q |
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| T |
39823287 |
aagcaacatatgcagaaagaaattaaaggcgaaaaacaaacttac |
39823243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 191
Target Start/End: Complemental strand, 39823421 - 39823318
Alignment:
| Q |
89 |
gaaagctgatattagtgtcacagtccccaaaatgatg-ctgccctcatcaaacactcaaagtaatcgatgtaaggaggcctagaacaaagcaaaatcaga |
187 |
Q |
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|||||||||||| ||| |||||||||||||| |||| || | ||||||||| ||| ||| || ||||||| || ||||||| |||||||||||||| |
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| T |
39823421 |
gaaagctgatatcggtgccacagtccccaaaaggatggctatcttcatcaaactctctaagaaagagatgtaattagccctagaataaagcaaaatcaga |
39823322 |
T |
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| Q |
188 |
tata |
191 |
Q |
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|||| |
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| T |
39823321 |
tata |
39823318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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