View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17560_low_2 (Length: 538)
Name: NF17560_low_2
Description: NF17560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17560_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 12 - 519
Target Start/End: Complemental strand, 41324534 - 41324027
Alignment:
| Q |
12 |
agataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcactatatatacannnnnnnaagcatcc |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41324534 |
agataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcactatatatacatttttttaagcatcc |
41324435 |
T |
|
| Q |
112 |
ttctagatatactaagtagaaatcacttccaaatttcaagcnnnnnnngagttgcataaataacaagattaatactacctaaattcattgataaatttaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41324434 |
ttctagatatactaagtagaaatcacttccaaatttcaagcaaaaaaagagttgcataaataacaagattaatactacctaaattcattgataaatttaa |
41324335 |
T |
|
| Q |
212 |
ttatgtaacataatacaggtggatactctcatgcactagaggataagctctcatatggagtcgacatgaaatttattagatggtgtggcattctacaggt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41324334 |
ttatgtaacataatacaggtggatactctcatgcactagaggataagctctcatatggagtcgacatgaaatttattagatggtgtggcattctacaggt |
41324235 |
T |
|
| Q |
312 |
aaaaaatcaaacgaattgaaaaatgttacgcgaggcctaatgcaaaataatcacatttgaacgcagttttgattgaccacatttttgaatttgtgtgtgc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41324234 |
aaaaaatcaaacgaattgaaaaatgttacgcgaggcctaatgcaaaataatcacatttgaacgcagttttgattgaccacatttttgaatttgtgtgtgc |
41324135 |
T |
|
| Q |
412 |
agagaatagcactagtatattgtattgtggctctaatagagacatttaccaccaagcttagacccgctaccttgaggtctggacgcatagccattttcac |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
41324134 |
agagaatagcactagtatattgtattgtggctctaatagagacatttaccaccaagcttagacccactaccttgaggcctggacgcatagccattttcac |
41324035 |
T |
|
| Q |
512 |
tgcctata |
519 |
Q |
| |
|
|||||||| |
|
|
| T |
41324034 |
tgcctata |
41324027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 405 - 519
Target Start/End: Complemental strand, 41309534 - 41309420
Alignment:
| Q |
405 |
tgtgtgcagagaatagcactagtatattgtattgtggctctaatagagacatttaccaccaagcttagacccgctaccttgaggtctggacgcatagcca |
504 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||| |
|
|
| T |
41309534 |
tgtgtgcagagaatagcccttgtatattgtattgtggctctaatagagacatttaccaccaagcttagacccactaccttgagtcccggacgcatagcca |
41309435 |
T |
|
| Q |
505 |
ttttcactgcctata |
519 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
41309434 |
ttttcactgcctata |
41309420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 12 - 94
Target Start/End: Complemental strand, 41309836 - 41309754
Alignment:
| Q |
12 |
agataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaacaaaactcctcaaactcactatatata |
94 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
41309836 |
agataattctcaggacattgaaacttctcttttggggtatacttttgcaaggtaaacaaaactcttcaaactcactaaatata |
41309754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 311
Target Start/End: Complemental strand, 41309659 - 41309612
Alignment:
| Q |
264 |
atatggagtcgacatgaaatttattagatggtgtggcattctacaggt |
311 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
41309659 |
atatggagttaacatgaaatttatcagatggtgtggcattctccaggt |
41309612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 409 - 475
Target Start/End: Original strand, 27657492 - 27657558
Alignment:
| Q |
409 |
tgcagagaatagcactagtatattgtattgtggctctaatagagacatttaccaccaagcttagacc |
475 |
Q |
| |
|
||||||| ||||| || |||||||| ||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
27657492 |
tgcagaggatagctcttgtatattgcattgtagctctaatagagacatttaccactaagcttagacc |
27657558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 312
Target Start/End: Original strand, 27657326 - 27657379
Alignment:
| Q |
259 |
ctctcatatggagtcgacatgaaatttattagatggtgtggcattctacaggta |
312 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
27657326 |
ctctcatatggagttgacatgaaatttatcagatggtgtggcattcttcaggta |
27657379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 27656723 - 27656779
Alignment:
| Q |
12 |
agataatacttaggacattgaagcttctcttttggggtatactattgcaaggtaaac |
68 |
Q |
| |
|
||||||| |||||||||| ||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
27656723 |
agataatttttaggacattaaagcttctcttctggggtttacttttgcaaggtaaac |
27656779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University