View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17560_low_8 (Length: 262)
Name: NF17560_low_8
Description: NF17560
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17560_low_8 |
 | |
|
| [»] chr5 (15 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0627 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 8529277 - 8529027
Alignment:
| Q |
12 |
agcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgttttttgttgtag |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529277 |
agcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcataatgttttttgttgtag |
8529178 |
T |
|
| Q |
112 |
gcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattgga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529177 |
gcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattgga |
8529078 |
T |
|
| Q |
212 |
gaatcatggactaagatttacaacatcgatacttcgttcaatcctttggat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8529077 |
gaatcatggactaagatttacaacatcgatacttcgttcaatcctttggat |
8529027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 257
Target Start/End: Complemental strand, 8535840 - 8535590
Alignment:
| Q |
13 |
gcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatg------ttttttgt |
106 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| | || |||||||||||||||||||||| ||||||||||||||||| || || || |
|
|
| T |
8535840 |
gcaaaggtcaatattgattttctgctttgaaagtgagacgctgaagtcatttccttctcctccacagatgtttggaaatcataataatggatttcttagt |
8535741 |
T |
|
| Q |
107 |
tgtaggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggca |
206 |
Q |
| |
|
||| | |||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8535740 |
aatagacatattagcatgggagaattaaagggatttctttacatttgtgattcgacctttttatctgatgtttcaatgtgggttatgaatgaatatggca |
8535641 |
T |
|
| Q |
207 |
ttggagaatcatggactaagatttacaacatcgatacttcgttcaatcctt |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
8535640 |
ttggagaatcatggactaagatttacaacattgatacttcattcaatcctt |
8535590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 12 - 258
Target Start/End: Original strand, 1600066 - 1600316
Alignment:
| Q |
12 |
agcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgtttt---ttgttg |
108 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| | |
|
|
| T |
1600066 |
agcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccacatgagtttggaaatcataataatggaacttgtgg |
1600165 |
T |
|
| Q |
109 |
ta---ggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggc |
205 |
Q |
| |
|
|| | | | |||||||||||||||||||||||||||| ||||||||||| | |||||| ||||| ||||| |||||||||||||||| ||||||||| |
|
|
| T |
1600166 |
taacagccatgttagcatgggagaattaaagggatttctttacatttgtga--ctacctttttatctgatgttccaatgtgggttatgaaggaatatggc |
1600263 |
T |
|
| Q |
206 |
attggagaatcatggactaagatttacaacatcgatacttcgttcaatccttt |
258 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
1600264 |
attgaagaatcatggactaaggtttacaagtacgatacttcattcaatccttt |
1600316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 9074492 - 9074740
Alignment:
| Q |
12 |
agcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgtttt--ttgttgt |
109 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||| | |||||| |
|
|
| T |
9074492 |
agcaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgcatgtgtttggaaaccataatagtggaattgttga |
9074591 |
T |
|
| Q |
110 |
aggcctat-tagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcatt |
208 |
Q |
| |
|
| | || |||||||||||||||||||||||| ||||||||||| ||| ||| ||||| |||||||| |||||||||||||||||||||| ||| |
|
|
| T |
9074592 |
taacagacatatcatgggagaattaaagggatttctttacatttgtgactggacatttttatctgatgtttcagtgtgggttatgaatgaatatggtatt |
9074691 |
T |
|
| Q |
209 |
ggagaatcatggactaagatttacaacatcgatacttcgttcaatcctt |
257 |
Q |
| |
|
| ||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
9074692 |
gaagaatcatggactaaagtttacaacattgatacttcgttcaatcctt |
9074740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 8641720 - 8641475
Alignment:
| Q |
12 |
agcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataat---------gtttt |
102 |
Q |
| |
|
|||||||||||||||| |||||| || |||| |||||| ||| ||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
8641720 |
agcaaaggtcaatattatgtttctgtttggaaagtgagagattgaagttatttccttctcctccacatgtgtttggaaatcataataataatggaattca |
8641621 |
T |
|
| Q |
103 |
ttgttgtaggcctattagcatgggagaattaaagggatttctatacatttgtgatc------cgacctttatatctaatgtttcaatgtgggttatgaat |
196 |
Q |
| |
|
| || |||| ||||||||||||||| ||||||||||||| ||||||||||||| |||||||| | | | |||| || |||||||||||||| |
|
|
| T |
8641620 |
tggtaacaggcttattagcatgggagagttaaagggatttccttacatttgtgatcgtgactcgacctttttctttgatgtcacagtgtgggttatgaat |
8641521 |
T |
|
| Q |
197 |
gaatatggcattggagaatcatggactaagatttacaacatcgata |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
8641520 |
gaatatggcattggagaatcatggactaaggcttacaacattgata |
8641475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 247
Target Start/End: Original strand, 2856682 - 2856897
Alignment:
| Q |
38 |
tttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcat---aatgttttttgttgtag---gcctattagcatgggagaat |
131 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||| ||||||||| |
|
|
| T |
2856682 |
tttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccatagcatgcctattagattgggagaat |
2856781 |
T |
|
| Q |
132 |
taaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagattta |
231 |
Q |
| |
|
| ||||||||||| ||||||||| || | | | | |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2856782 |
tgaagggatttctttacatttgtcatagatcgtctctcgagaatgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgttta |
2856881 |
T |
|
| Q |
232 |
caacatcgatacttcg |
247 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
2856882 |
caacattgatacttcg |
2856897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 38 - 247
Target Start/End: Original strand, 2874292 - 2874507
Alignment:
| Q |
38 |
tttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcat---aatgttttttgttgtag---gcctattagcatgggagaat |
131 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||| ||||||||| |
|
|
| T |
2874292 |
tttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccatagcatgcctattagattgggagaat |
2874391 |
T |
|
| Q |
132 |
taaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagattta |
231 |
Q |
| |
|
| ||||||||||| ||||||||| || | | | | |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2874392 |
tgaagggatttctttacatttgtcatagatcgtctctcgagaatgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgttta |
2874491 |
T |
|
| Q |
232 |
caacatcgatacttcg |
247 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
2874492 |
caacattgatacttcg |
2874507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 174 - 260
Target Start/End: Complemental strand, 8637039 - 8636953
Alignment:
| Q |
174 |
atgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatcctttgg |
260 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||| |||||||| |
|
|
| T |
8637039 |
atgttgcaatgtgggttatgaatgaatatggcattggagaatcatggactaaggtttacaacatcgatactttggtcagtcctttgg |
8636953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 247
Target Start/End: Original strand, 2844855 - 2845070
Alignment:
| Q |
38 |
tttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcat---aatgttttttgttgtag---gcctattagcatgggagaat |
131 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||| ||| ||||||||| ||||||||| |
|
|
| T |
2844855 |
tttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtttggaaatcatgataatggatttccccttagcatgcctattagattgggagaat |
2844954 |
T |
|
| Q |
132 |
taaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagattta |
231 |
Q |
| |
|
| ||||||||||| ||||||||| || | | | | |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2844955 |
tgaagggatttctttacatttgtcatatatcgtctcttgagaatgttacaatgtgggttatgaatgaatatggcattggagaatcatggactattgttta |
2845054 |
T |
|
| Q |
232 |
caacatcgatacttcg |
247 |
Q |
| |
|
|| ||| ||||||||| |
|
|
| T |
2845055 |
cagcattgatacttcg |
2845070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 260
Target Start/End: Complemental strand, 8644546 - 8644298
Alignment:
| Q |
15 |
aaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatca---taatgttttttgttgtag |
111 |
Q |
| |
|
||||||| |||||| |||||| ||||||| |||||||||||| |||||||||||||||||| |||||| |||||| ||||| ||| || ||| |
|
|
| T |
8644546 |
aaaggtctatattgtgtttctgttttgaaagtgagaggttgcaatcatttccttctcctcca---gtgtttcaaaatcaaaataatggatttcgtcgtaa |
8644450 |
T |
|
| Q |
112 |
---gcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatc-taatgtttcaatgtgggttatgaatgaatatggcat |
207 |
Q |
| |
|
|| |||| ||||||||||||||| |||||| || |||||||| ||| | | || | || | ||||| |||||||||||||||||||||||| ||| |
|
|
| T |
8644449 |
cgagcgtattcgcatgggagaattaaggggattactttacatttgcgatac-atattcttttcgtgatgttgcaatgtgggttatgaatgaatatgacat |
8644351 |
T |
|
| Q |
208 |
tggagaatcatggactaagatttacaacatcgatacttcgttcaatcctttgg |
260 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||| | ||| |||||||| |
|
|
| T |
8644350 |
tggagaatcatggactaaggtttacaacattgatactttgatcagtcctttgg |
8644298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 2904938 - 2905003
Alignment:
| Q |
180 |
caatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatactt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2904938 |
caatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacattgatactt |
2905003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 8677986 - 8677918
Alignment:
| Q |
174 |
atgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgata |
242 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
8677986 |
atgttgcaatgtgggatatgaatgaatatggcattggagaatcatggactaaggtttacaacattgata |
8677918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 245
Target Start/End: Original strand, 8547984 - 8548108
Alignment:
| Q |
115 |
tattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaa |
214 |
Q |
| |
|
||||||| |||||||||||||||||| ||| ||||||||||| || || | | ||| ||||| |||||||||||||||| ||||| |||||| |
|
|
| T |
8547984 |
tattagcttgggagaattaaagggatgtctttacatttgtgactggaactatctctcttatgttacaatgtgggttatgaacgaata------tggagag |
8548077 |
T |
|
| Q |
215 |
tcatggactaagatttacaacatcgatactt |
245 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| |
|
|
| T |
8548078 |
tcatggactaagatttaccacattgatactt |
8548108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 2904774 - 2904848
Alignment:
| Q |
14 |
caaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttgga |
88 |
Q |
| |
|
|||| |||||||||| |||| | ||||||| ||||||| |||| ||||||||||||||||||||| |||||||| |
|
|
| T |
2904774 |
caaaagtcaatattgtgtttcagttttgaaagtgagaggatgcaatcatttccttctcctccacatatgtttgga |
2904848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 8637201 - 8637140
Alignment:
| Q |
15 |
aaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctcca |
76 |
Q |
| |
|
||||||| |||||| |||||| || ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8637201 |
aaaggtctatattgtgtttctgtttagaaaatgagaggttgcaatcatttccttctcctcca |
8637140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 9443438 - 9443188
Alignment:
| Q |
12 |
agcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgttttttgttgtag |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
9443438 |
agcaaaggtcaatattggttttctgctttgaaagtgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgtttattgtagtag |
9443339 |
T |
|
| Q |
112 |
gcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattgga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443338 |
gcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattgga |
9443239 |
T |
|
| Q |
212 |
gaatcatggactaagatttacaacatcgatacttcgttcaatcctttggat |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9443238 |
gaatcatggactaagatttacaacatcgatacttcgttcaatcctttggat |
9443188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 12 - 257
Target Start/End: Original strand, 48361618 - 48361869
Alignment:
| Q |
12 |
agcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatg------ttttttg |
105 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| || || | |
|
|
| T |
48361618 |
agcaaaggtcaatattgtttttctgttttgaaagtgagagggtgcagtcatttccttctcctccacatgtgtttggaaatcataataatggaattcttgg |
48361717 |
T |
|
| Q |
106 |
ttgtaggcctattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggc |
205 |
Q |
| |
|
| |||| |||||||||||||||||||||||||||||| ||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48361718 |
taacaggcatattagcatgggagaattaaagggatttctttacatttgtgactcgacctttgcatctgatgtttcaatgtgggttatgaatgaatatggt |
48361817 |
T |
|
| Q |
206 |
attggagaatcatggactaagatttacaacatcgatacttcgttcaatcctt |
257 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||| ||||| |||||||||||| |
|
|
| T |
48361818 |
attgaagaatcatagactaaggtttacaacatcaatactgcgttcaatcctt |
48361869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 46 - 253
Target Start/End: Complemental strand, 35780119 - 35779921
Alignment:
| Q |
46 |
tgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgttttttgttgtaggcctattagcatgggagaattaaagggatttcta |
145 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||| || | |||| |||||||||||||||||||||||||||||| |
|
|
| T |
35780119 |
tgagaggttgcagccatttccttctcctccacatgtgtttggaattcatgataat---------aggcgtattagcatgggagaattaaagggatttctt |
35780029 |
T |
|
| Q |
146 |
tacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatactt |
245 |
Q |
| |
|
||||||||||| || ||| | | ||||| ||||||||||||||||||| ||||||||| |||||| ||||||||| |||||||||| || |||| |
|
|
| T |
35780028 |
tacatttgtgacttgaatttttttgttgatgttacaatgtgggttatgaatgagcatggcattgaagaatcgtggactaaggtttacaacattgagactt |
35779929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 26324198 - 26324287
Alignment:
| Q |
168 |
tatctaatgtttcaatgtgggttatgaatgaatatggcattggagaatcatggactaagatttacaacatcgatacttcgttcaatcctt |
257 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
26324198 |
tatctgatgtttcaatgtgggttatgaatgaatatggcactggagaatcatggactaagatttacaacatcgatgcttcgttcaatcctt |
26324287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 157
Target Start/End: Complemental strand, 5131081 - 5130959
Alignment:
| Q |
38 |
tttgaaaatgagaggttgcagtcatttccttctcctccacatgtgtttggaaatcataatgttttttgttgta---ggcctattagcatgggagaattaa |
134 |
Q |
| |
|
||||||| |||||| ||||| ||||| |||||||||||||| ||||||| ||||||||||| ||||| | | | || ||| ||||||||||||||| |
|
|
| T |
5131081 |
tttgaaagtgagagattgcaatcattcccttctcctccacacgtgtttgaaaatcataatgatttttatggcaccgagcatatcggcatgggagaattaa |
5130982 |
T |
|
| Q |
135 |
agggatttctatacatttgtgat |
157 |
Q |
| |
|
|||||||||| ||||||| |||| |
|
|
| T |
5130981 |
agggatttctttacatttctgat |
5130959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 115 - 245
Target Start/End: Complemental strand, 16716577 - 16716447
Alignment:
| Q |
115 |
tattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| | | ||| | ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16716577 |
tattagcatgggagaattaaagggatttctatacatttctgactcaaacttcttcgaatatgttacaatgtgggttatgaatgaatatggcattggagaa |
16716478 |
T |
|
| Q |
215 |
tcatggactaagatttacaacatcgatactt |
245 |
Q |
| |
|
|||||||||||| ||||| |||| ||||||| |
|
|
| T |
16716477 |
tcatggactaaggtttaccacattgatactt |
16716447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0627 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: scaffold0627
Description:
Target: scaffold0627; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 115 - 258
Target Start/End: Complemental strand, 4878 - 4735
Alignment:
| Q |
115 |
tattagcatgggagaattaaagggatttctatacatttgtgatccgacctttatatctaatgtttcaatgtgggttatgaatgaatatggcattggagaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| | | || || ||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
4878 |
tattagcatgggagaattaaagggatttctttacatttgtgactcaaactccttaaaatatgttacaatgtgggttatgaatgaatatggcattggtgaa |
4779 |
T |
|
| Q |
215 |
tcatggactaagatttacaacatcgatacttcgttcaatccttt |
258 |
Q |
| |
|
|||||||||||| ||||| |||| |||||| || ||||||||| |
|
|
| T |
4778 |
tcatggactaaggtttaccacattaatactttgtacaatccttt |
4735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University