View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17562_high_5 (Length: 307)
Name: NF17562_high_5
Description: NF17562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17562_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 191 - 301
Target Start/End: Complemental strand, 33601358 - 33601247
Alignment:
| Q |
191 |
gatgggcaccaatgtaatgttgtcggaaagaagcatcaaaataaa-tgtagttgctatagatttctccacattttgaaatttgattggttatacatcaca |
289 |
Q |
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| T |
33601358 |
gatgggcaccaatgtaatgttgtcggaaagaagcatcaaaataaaatgtagttgctctagatttctccacattttgaaatttgattggttacacatcaca |
33601259 |
T |
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| Q |
290 |
tcaagggttcat |
301 |
Q |
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|||||||||||| |
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| T |
33601258 |
tcaagggttcat |
33601247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 33601533 - 33601468
Alignment:
| Q |
16 |
atatgttatcccacctcatcccataaaaagtgggactggccctaggttcctgctgcaattgaggtg |
81 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33601533 |
atatgttatcctacctcatcccataaaaagtgggactggccctaggttcctgctgcaattgaggtg |
33601468 |
T |
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