View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17562_high_6 (Length: 292)
Name: NF17562_high_6
Description: NF17562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17562_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 281
Target Start/End: Original strand, 3672028 - 3672293
Alignment:
| Q |
16 |
aaatgttgtctaacctctgatactgatttttcacaccatacttgcaattacagttaagttaatttagtcgtagcttaatgcaattagctccaaatagata |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3672028 |
aaatgttgtctaacctttgatactgatttttcacaccatacttgcaattacagttaagttaatttagtcgtagcttaatgcaattagctccaaatagata |
3672127 |
T |
|
| Q |
116 |
caaatacattatataaataacattgttggaaatgttcaataataaccccttgttcacaatctattctatttaattttatcattactgtttgaaagttatg |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3672128 |
caaatacattatataaataacattgttggaaatgttcaataataaccccttgttcacaatctattctatttaattttatcattaccgtttgaaagttatg |
3672227 |
T |
|
| Q |
216 |
cagcttaacacgttcctggaattcatatttattagcatatagtatatttttgtttgaattcatatt |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3672228 |
cagcttaacacgttcctggaattcatatttattagcatatagtatatttttgtttgaattcatatt |
3672293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 187
Target Start/End: Complemental strand, 21733197 - 21733025
Alignment:
| Q |
16 |
aaatgttgtctaacctctgatactgatttttcacaccatacttgcaa-ttacagttaagttaatttagtcgtagcttaatgcaattagctccaaatagat |
114 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21733197 |
aaatgctgtctaacctctaatactgatttttcacactatacttgcaaattacagttaagctaatttagtcgtagcttaatgcaattagctcgaaatagat |
21733098 |
T |
|
| Q |
115 |
acaaatacattatataaataacattgttggaaatgttcaataataaccccttgttcacaatctattctattta |
187 |
Q |
| |
|
||||| ||| ||||||| | ||| | ||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21733097 |
acaaaaacagtatataactgacactattggaaaggttcaataataaccccttgttcacaatctaatctattta |
21733025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 21732866 - 21732782
Alignment:
| Q |
173 |
aatctattctatttaattttatcattactgttt-gaaagttatgcagcttaacacgttcctggaattcatatttattagcatata |
256 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| | ||||||| ||| ||||||| |||||| |||||||| || |||||||||| |
|
|
| T |
21732866 |
aatctattctatttaattttatcagtaatgtttgggaagttatacagtttaacacattcctgaaattcatagtttttagcatata |
21732782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 281
Target Start/End: Complemental strand, 21732724 - 21732695
Alignment:
| Q |
252 |
atatagtatatttttgtttgaattcatatt |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
21732724 |
atatagtatatttttgtttgaattcatatt |
21732695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 22 - 162
Target Start/End: Original strand, 44518495 - 44518630
Alignment:
| Q |
22 |
tgtctaacctctgatactgatttttcacaccatacttgcaattacagttaagttaatttagtcgtagcttaatgcaattagctccaaatagatacaaata |
121 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44518495 |
tgtctaacctctaatactgatttttcacaccatacttacaattac-----tgttaatttagttgtagcttaatgcaattagctccaaatagatacaaata |
44518589 |
T |
|
| Q |
122 |
cattatataaataacattgttggaaatgttcaataataacc |
162 |
Q |
| |
|
|| ||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
44518590 |
cagtatataaataacactattggaaatgttcaataataacc |
44518630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 42448461 - 42448520
Alignment:
| Q |
200 |
ctgtttgaaagttatgcagcttaacacgttcctggaattcatatttattagcatatagta |
259 |
Q |
| |
|
||||||| ||||||||||||||||||| || ||||| ||| ||||||||| ||||||||| |
|
|
| T |
42448461 |
ctgtttggaagttatgcagcttaacacattactggatttcttatttattaccatatagta |
42448520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 44518858 - 44518893
Alignment:
| Q |
166 |
tgttcacaatctattctatttaattttatcattact |
201 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44518858 |
tgttcacaatccattctatttaattttatcattact |
44518893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 200 - 281
Target Start/End: Complemental strand, 6613046 - 6612965
Alignment:
| Q |
200 |
ctgtttgaaagttatgcagcttaacacgttcctggaattcatatttattagcatatagtatatttttgtttgaattcatatt |
281 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
6613046 |
ctgtttggaagttatgcagcttaacacattcctggaattcatatttattagcctttagtatatttttgtttgaattcatatt |
6612965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 25455367 - 25455412
Alignment:
| Q |
212 |
tatgcagcttaacacgttcctggaattcatatttattagcatatag |
257 |
Q |
| |
|
||||||||||||||| ||||| || ||| ||||||||||||||||| |
|
|
| T |
25455367 |
tatgcagcttaacacattccttgagttcttatttattagcatatag |
25455412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University