View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17562_high_7 (Length: 243)
Name: NF17562_high_7
Description: NF17562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17562_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 38 - 223
Target Start/End: Complemental strand, 30249111 - 30248938
Alignment:
| Q |
38 |
ttagcaggtttagtgcatcgaacatttagtgttgttgttgtaaagaagaacaagaagggtgtgggtggtgggtttgaaagatgatttattctatgcagca |
137 |
Q |
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| T |
30249111 |
ttagcaggcttagtgcatcgaatatttagtgttgttgttgtaaagaagaacaagaagggtgtgggtggtgggtttgaaagatgatttattctatgcagcg |
30249012 |
T |
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| Q |
138 |
gcatgttgttgaataggatgtgggttcaacattaaattcaacactatattcaacagttagtgttgtttgttggaagatgatttagt |
223 |
Q |
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| T |
30249011 |
gcacgttgttgaataggatgtgggttcaacattaaattc------------aacagttagtgttgtttgttggaagatgatttagt |
30248938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 16 - 223
Target Start/End: Complemental strand, 21508057 - 21507852
Alignment:
| Q |
16 |
taacttactacaaagcattcaattagcaggtttagtgcatcgaacatttagtgttgttgttgtaaagaagaacaagaagggtgtgggtggtgggtttgaa |
115 |
Q |
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| T |
21508057 |
taacttactacaaagcattcaattagcaggcttaatgcatcgaacatttggtgttgttgttgtaaagaagaataagaagggtgagggtggtgggtttgaa |
21507958 |
T |
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| Q |
116 |
agatgatttattctatgcagcagcatgttgttgaataggatgtgggttcaacattaaattcaacactatattcaacagttagtgttgtttgttggaagat |
215 |
Q |
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| T |
21507957 |
agatgatttattctatgcggtagcacgttgttgaataggatgtgggt--ggtggtgggttcaacattatgttcaacatttagtgttgtttgttggaagat |
21507860 |
T |
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| Q |
216 |
gatttagt |
223 |
Q |
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|||||||| |
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| T |
21507859 |
gatttagt |
21507852 |
T |
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