View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17562_low_1 (Length: 562)

Name: NF17562_low_1
Description: NF17562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17562_low_1
NF17562_low_1
[»] chr8 (11 HSPs)
chr8 (16-250)||(3963446-3963685)
chr8 (276-360)||(3964168-3964252)
chr8 (389-548)||(3964302-3964457)
chr8 (295-413)||(43636531-43636648)
chr8 (293-356)||(43835156-43835219)
chr8 (295-356)||(33775422-33775483)
chr8 (268-307)||(2766738-2766777)
chr8 (292-357)||(4639959-4640024)
chr8 (292-357)||(34471423-34471488)
chr8 (292-357)||(43635460-43635525)
chr8 (292-347)||(28704194-28704249)
[»] chr5 (22 HSPs)
chr5 (252-354)||(10399111-10399213)
chr5 (294-356)||(9883739-9883801)
chr5 (292-347)||(19044078-19044133)
chr5 (257-306)||(25359178-25359227)
chr5 (296-356)||(3460122-3460182)
chr5 (296-413)||(40014119-40014234)
chr5 (293-357)||(41758543-41758607)
chr5 (295-356)||(4845492-4845553)
chr5 (299-356)||(19401731-19401788)
chr5 (292-347)||(6427473-6427528)
chr5 (292-347)||(11125624-11125679)
chr5 (251-306)||(40033890-40033945)
chr5 (389-455)||(10399023-10399089)
chr5 (292-357)||(3461244-3461309)
chr5 (292-357)||(6270959-6271024)
chr5 (292-357)||(20202513-20202578)
chr5 (292-357)||(25898828-25898893)
chr5 (292-357)||(40017014-40017079)
chr5 (293-357)||(16101068-16101132)
chr5 (293-336)||(10532964-10533007)
chr5 (292-341)||(28784605-28784654)
chr5 (292-357)||(39223095-39223160)
[»] chr4 (27 HSPs)
chr4 (252-548)||(3394471-3394767)
chr4 (292-356)||(49261614-49261678)
chr4 (292-347)||(13867646-13867701)
chr4 (257-306)||(23619593-23619642)
chr4 (295-379)||(46815291-46815376)
chr4 (298-356)||(36173117-36173175)
chr4 (295-356)||(33163181-33163242)
chr4 (292-344)||(372864-372916)
chr4 (292-348)||(40221137-40221193)
chr4 (292-347)||(13855924-13855979)
chr4 (491-548)||(17212387-17212444)
chr4 (296-353)||(24607989-24608046)
chr4 (297-341)||(40962538-40962582)
chr4 (257-332)||(37694374-37694449)
chr4 (292-347)||(49065387-49065442)
chr4 (491-548)||(373074-373132)
chr4 (297-347)||(14990150-14990200)
chr4 (292-357)||(1227768-1227833)
chr4 (292-357)||(2778146-2778211)
chr4 (292-357)||(16524911-16524976)
chr4 (292-357)||(47043650-47043715)
chr4 (292-360)||(42039207-42039275)
chr4 (292-347)||(886870-886925)
chr4 (292-347)||(21713006-21713061)
chr4 (303-357)||(27760972-27761026)
chr4 (293-347)||(31936164-31936218)
chr4 (295-356)||(53267308-53267369)
[»] chr6 (8 HSPs)
chr6 (252-463)||(23911962-23912176)
chr6 (252-332)||(17399173-17399253)
chr6 (295-357)||(35054777-35054839)
chr6 (292-357)||(14153705-14153770)
chr6 (293-345)||(11718492-11718544)
chr6 (292-347)||(16444618-16444673)
chr6 (292-357)||(14830743-14830808)
chr6 (292-353)||(35053658-35053719)
[»] chr2 (13 HSPs)
chr2 (252-341)||(20149444-20149533)
chr2 (389-469)||(16709993-16710073)
chr2 (292-357)||(25685884-25685949)
chr2 (293-357)||(2155100-2155164)
chr2 (295-356)||(22494649-22494710)
chr2 (292-357)||(22495735-22495800)
chr2 (295-347)||(16710087-16710139)
chr2 (292-357)||(18394624-18394689)
chr2 (292-341)||(24937244-24937293)
chr2 (257-305)||(2195057-2195105)
chr2 (481-548)||(20149236-20149304)
chr2 (292-357)||(12967571-12967636)
chr2 (292-357)||(29132465-29132530)
[»] chr1 (26 HSPs)
chr1 (257-345)||(3782056-3782144)
chr1 (251-332)||(30858642-30858723)
chr1 (295-356)||(45690439-45690500)
chr1 (295-356)||(50067013-50067074)
chr1 (296-356)||(5767435-5767495)
chr1 (293-356)||(23602786-23602849)
chr1 (295-357)||(6086480-6086542)
chr1 (295-356)||(5766654-5766715)
chr1 (292-357)||(49597382-49597447)
chr1 (389-453)||(5767325-5767389)
chr1 (389-455)||(47983945-47984011)
chr1 (251-332)||(1671189-1671270)
chr1 (292-341)||(41871923-41871972)
chr1 (292-347)||(11012328-11012383)
chr1 (257-304)||(22529297-22529344)
chr1 (292-347)||(48566948-48567003)
chr1 (295-356)||(27034240-27034301)
chr1 (292-357)||(47485740-47485805)
chr1 (295-356)||(47486810-47486871)
chr1 (292-336)||(39650548-39650592)
chr1 (292-352)||(50065815-50065875)
chr1 (292-347)||(9343667-9343722)
chr1 (292-347)||(39222893-39222948)
chr1 (251-305)||(22605582-22605636)
chr1 (292-357)||(18171795-18171860)
chr1 (292-357)||(46178830-46178895)
[»] chr3 (17 HSPs)
chr3 (292-368)||(25886223-25886299)
chr3 (295-356)||(53825783-53825844)
chr3 (312-463)||(6463207-6463361)
chr3 (257-307)||(12782540-12782590)
chr3 (292-357)||(39415536-39415601)
chr3 (295-356)||(42948951-42949012)
chr3 (390-548)||(6755345-6755500)
chr3 (297-357)||(7955504-7955564)
chr3 (292-347)||(48087033-48087088)
chr3 (295-353)||(6755550-6755608)
chr3 (292-346)||(25575017-25575071)
chr3 (295-360)||(14995381-14995446)
chr3 (292-347)||(35485597-35485652)
chr3 (292-347)||(42947716-42947771)
chr3 (292-346)||(53824643-53824697)
chr3 (302-347)||(32211322-32211367)
chr3 (293-357)||(44833779-44833843)
[»] scaffold0223 (1 HSPs)
scaffold0223 (292-347)||(15921-15976)
[»] scaffold1700 (1 HSPs)
scaffold1700 (295-356)||(959-1020)
[»] chr7 (19 HSPs)
chr7 (295-379)||(20377846-20377930)
chr7 (296-356)||(48219629-48219689)
chr7 (294-353)||(8725835-8725894)
chr7 (257-332)||(33803069-33803144)
chr7 (292-357)||(18239258-18239323)
chr7 (295-379)||(26500952-26501035)
chr7 (295-379)||(26591678-26591761)
chr7 (293-347)||(2913147-2913201)
chr7 (293-357)||(48218509-48218573)
chr7 (292-357)||(1536907-1536972)
chr7 (481-548)||(21613417-21613485)
chr7 (295-353)||(21613217-21613273)
chr7 (292-347)||(41219216-41219271)
chr7 (294-344)||(8261074-8261124)
chr7 (253-307)||(14678449-14678502)
chr7 (295-341)||(21153950-21153996)
chr7 (293-347)||(34354254-34354308)
chr7 (292-357)||(29714490-29714555)
chr7 (293-357)||(38791201-38791265)
[»] scaffold0861 (1 HSPs)
scaffold0861 (292-347)||(3551-3606)
[»] scaffold1455 (1 HSPs)
scaffold1455 (292-357)||(35-100)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-101; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 3963446 - 3963685
Alignment:
Q  16 gaaacaccaaatatatttaaaataggagatttagggtttgaacgatggaaaatttatctactaataactaacatttcttggtaaaaaattagtgacaaca 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3963446 gaaacaccaaatatatttaaaataggagatttggggtttgaacgatggaaaatttatctactaataactaacatttctttgtaaaaaattagtgacaaca 3963545  T
Q  116 t-----catgaggagatatggtagaagcacatcaagaggaaaagttatgttggtagttaatttatcaagtggaatggaaatttgtttggagcagtatcga 210  Q
    |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  3963546 tttggtcatgaggagatatggtagaagcacatcaagaggaaaagttatgttggtagttaatttattaagtggaatgggaatttgttaggagcagtatcga 3963645  T
Q  211 actctaaaatttcttgtaatccttaaaagcgaattttgaa 250  Q
    ||||||||||||| |||||||||||||| ||| |||||||    
T  3963646 actctaaaatttcatgtaatccttaaaaacgacttttgaa 3963685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 276 - 360
Target Start/End: Original strand, 3964168 - 3964252
Alignment:
Q  276 gctatgttaccttaaaccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctcatca 360  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  3964168 gctatgttaccttaaaccacctataaatacccctccaaacttcctcatttcctcacaccatctcacattctcaccctcctcatca 3964252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 389 - 548
Target Start/End: Original strand, 3964302 - 3964457
Alignment:
Q  389 ccttctttattttggtgtaaaaagaaaacgaggctaattttgaggataaaaagatgattagtgagcaactatctttgggaagnnnnnnnnntcagattga 488  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||| |||||          | ||||||     
T  3964302 ccttctttattttggtgtaaaaagagaaagaggctaattttgaggataaaaagatgattagtgagaaactatcttggggaa---aaaagaattagattgg 3964398  T
Q  489 gcaaaactaaatgtgcatatttagattta-cccagtaaggctggttttcttgtggatttct 548  Q
    ||||||||||||||||  ||| ||||||| |||||||| ||| |||||||||| |||||||    
T  3964399 gcaaaactaaatgtgc--attgagatttaccccagtaaagctagttttcttgtagatttct 3964457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 413
Target Start/End: Original strand, 43636531 - 43636648
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctcatcattccctcctccgtgaatctccnnnnnnnccttct 394  Q
    ||||||||||| |||  |||||||||| |||||||||||||||||||||||||||||||||| ||| || |||| || ||||||| |       ||||||    
T  43636531 cctataaatacacctctaaacttccccttttcctcacaccatctcacattctcactctcctcctcactctctcccccatgaatcttcttcctttccttct 43636630  T
Q  395 ttattttggtgtaaaaaga 413  Q
    ||| |||||||||||||||    
T  43636631 tta-tttggtgtaaaaaga 43636648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 43835219 - 43835156
Alignment:
Q  293 cacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||||||||||  | |||||||||||||||| ||||||||||| |||||||||||||||||    
T  43835219 cacctataaatacctttgcaaacttccccatttcttcacaccatctaacattctcactctcctc 43835156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 33775422 - 33775483
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||||||| |||  |||||||| ||||||||||||||| ||||||||||||||||||||    
T  33775422 cctataaatacacctctaaacttcctcatttcctcacaccaactcacattctcactctcctc 33775483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 268 - 307
Target Start/End: Complemental strand, 2766777 - 2766738
Alignment:
Q  268 cattaagtgctatgttaccttaaaccacctataaataccc 307  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  2766777 cattaagtgctatgctaccttaaaccacctataaataccc 2766738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 4639959 - 4640024
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| ||||| | |||||||    
T  4639959 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttctccccctcctca 4640024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 34471488 - 34471423
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || |||| || ||||||||||| |||||||| ||||| | |||||||    
T  34471488 ccacctataaatacccctccatactttcctatttcctcacatcatctcactttctccccctcctca 34471423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 43635460 - 43635525
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| ||||| | |||||||    
T  43635460 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttctccccctcctca 43635525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 28704194 - 28704249
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| |||||    
T  28704194 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttctc 28704249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 3e-46; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 252 - 354
Target Start/End: Complemental strand, 10399213 - 10399111
Alignment:
Q  252 tcacattttttgacctcattaagtgctatgttaccttaaaccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactc 351  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10399213 tcacgttttttgacctcattaagtgctatgttaccttaaaccacctataaatacccctccaaacttccccatttcctcacaccatctcacattctcactc 10399114  T
Q  352 tcc 354  Q
    |||    
T  10399113 tcc 10399111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 294 - 356
Target Start/End: Complemental strand, 9883801 - 9883739
Alignment:
Q  294 acctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  9883801 acctataaatacccctccaaacttccccattttctcacaccatctcacattctcactctcctc 9883739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 19044078 - 19044133
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  19044078 ccacctataaatacccctccaaacttccccattttctcacaccatctcacattctc 19044133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 25359178 - 25359227
Alignment:
Q  257 ttttttgacctcattaagtgctatgttaccttaaaccacctataaatacc 306  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25359178 ttttttgacctcattaagtcctatgttaccttaaaccacctataaatacc 25359227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 3460182 - 3460122
Alignment:
Q  296 ctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    |||||||||| |||  |||||||||||||||||||||||| ||||||||||||||||||||    
T  3460182 ctataaatacacctctaaacttccccatttcctcacaccaactcacattctcactctcctc 3460122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 296 - 413
Target Start/End: Complemental strand, 40014234 - 40014119
Alignment:
Q  296 ctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctcatcattccctcctccgtgaatctccnnnnnnnccttctt 395  Q
    |||||||||| |||  |||||| ||| ||||||||||||| |||||||||||||||||||| ||| |||  || || ||||||| |       |||||||    
T  40014234 ctataaatacacctctaaactttcccgtttcctcacaccaactcacattctcactctcctcctcactcc--cccccatgaatcttcttcctttccttctt 40014137  T
Q  396 tattttggtgtaaaaaga 413  Q
    ||||||||||||||||||    
T  40014136 tattttggtgtaaaaaga 40014119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 293 - 357
Target Start/End: Complemental strand, 41758607 - 41758543
Alignment:
Q  293 cacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    ||||||||||||||||| || ||||||| |||||||||||||||||||| ||||| | |||||||    
T  41758607 cacctataaatacccctccatacttccctatttcctcacaccatctcactttctccccctcctca 41758543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 4845553 - 4845492
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||||||| |||  |||||| ||||||||||| ||||| ||||||||||||||||||||    
T  4845553 cctataaatacacctctaaactttcccatttcctcgcaccaactcacattctcactctcctc 4845492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 299 - 356
Target Start/End: Complemental strand, 19401788 - 19401731
Alignment:
Q  299 taaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||| |||  ||| ||| |||||||||||||||||||||||||||||||||||||    
T  19401788 taaatacacctctaaaattctccatttcctcacaccatctcacattctcactctcctc 19401731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 6427473 - 6427528
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||||||||| || ||||||| | |||||||||||||||||| |||||    
T  6427473 ccacctataaatacccctccatacttccctaattcctcacaccatctcactttctc 6427528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 11125679 - 11125624
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    ||||||||||||| |||| ||||||||| |||||||| |||| |||||||||||||    
T  11125679 ccacctataaatatccctccaaacttcctcatttcctgacactatctcacattctc 11125624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 40033945 - 40033890
Alignment:
Q  251 ctcacattttttgacctcattaagtgctatgttaccttaaaccacctataaatacc 306  Q
    ||||| ||||| ||||||||||||||  ||| ||||||||||||||||||||||||    
T  40033945 ctcacgtttttagacctcattaagtgaaatgctaccttaaaccacctataaatacc 40033890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 389 - 455
Target Start/End: Complemental strand, 10399089 - 10399023
Alignment:
Q  389 ccttctttattttggtgtaaaaagaaaacgaggctaattttgaggataaaaagatgattagtgagca 455  Q
    ||||||||||||||||||||||||| || ||||| |||| |  |||||||| ||||| |||||||||    
T  10399089 ccttctttattttggtgtaaaaagataaagaggcaaattctagggataaaatgatgagtagtgagca 10399023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 3461309 - 3461244
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| ||||| | |||||||    
T  3461309 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttctccccctcctca 3461244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 6270959 - 6271024
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| ||||| | |||||||    
T  6270959 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttctccccctcctca 6271024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 20202578 - 20202513
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| |||| |||||||||| |||| ||||| | |||||||    
T  20202578 ccacctataaatacccctccatacttccctattttctcacaccatatcactttctctccctcctca 20202513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 25898828 - 25898893
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| |||| |||||||||| |||| ||||| | |||||||    
T  25898828 ccacctataaatacccctccatacttccctattttctcacaccatatcactttctctccctcctca 25898893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 40017079 - 40017014
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| ||||| | |||||||    
T  40017079 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttctccccctcctca 40017014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 16101068 - 16101132
Alignment:
Q  293 cacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    ||||||||||||||||| || ||||| | ||||||||||||||| |||| ||||| | |||||||    
T  16101068 cacctataaatacccctccatacttctctatttcctcacaccatatcactttctctccctcctca 16101132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 336
Target Start/End: Original strand, 10532964 - 10533007
Alignment:
Q  293 cacctataaataccccttcaaacttccccatttcctcacaccat 336  Q
    ||||||||||||||||| || ||||||| |||||||||||||||    
T  10532964 cacctataaatacccctccatacttccctatttcctcacaccat 10533007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 28784654 - 28784605
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcac 341  Q
    |||||||||||||||||| || ||||| | ||||||||||||||| ||||    
T  28784654 ccacctataaatacccctccatacttctctatttcctcacaccatatcac 28784605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 39223095 - 39223160
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||  | ||||||||||||| |||| ||||| | |||||||    
T  39223095 ccacctataaatacccctccatacttccgtaattcctcacaccatatcactttctccccctcctca 39223160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 8e-41; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 252 - 548
Target Start/End: Complemental strand, 3394767 - 3394471
Alignment:
Q  252 tcacattttttgacctcattaagtgctatgttaccttaaaccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactc 351  Q
    |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||  | ||||||   ||| ||||||||||||||||||| | |||    
T  3394767 tcacgttttttgacctcattaaatgctatgttaccttaaaccacctataaatacccctcaatacttccttgttttctcacaccatctcacattccctctc 3394668  T
Q  352 tcctcatcattccctcctcc--gtgaatctccnnnnnnnccttctttattttggtgtaaaaagaaaacgaggctaattttgaggataaaaagatgattag 449  Q
    ||||| ||| || |||| ||   |||||||||       ||||||||||||||||||||||||| || |||   ||||||| ||||||||||||||||||    
T  3394667 tcctcctcactctctcccccttatgaatctccttttttcccttctttattttggtgtaaaaagagaaagagatcaattttggggataaaaagatgattag 3394568  T
Q  450 tgagcaactatctttgggaagnnnnnnnnntcagattgagcaaaactaaatgtgcatatttagattta-cccagtaaggctggttttcttgtggatttct 548  Q
    | |||| || || |||||||          |  ||||| | ||||||||||||||| |||||| |||| ||||| |||||||||||| ||||||||||||    
T  3394567 ttagcagctttc-ttgggaaaaaaagaagct--gattgggtaaaactaaatgtgcagatttagttttaccccaggaaggctggtttttttgtggatttct 3394471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 292 - 356
Target Start/End: Complemental strand, 49261678 - 49261614
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||||||    
T  49261678 ccacctataaatatccctccaaacttcctcatttcctcacatcatctcacattctcactctcctc 49261614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 13867701 - 13867646
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  13867701 ccacctataaatactcctccaaacttccccatttcctcacaccatctcacattctc 13867646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 23619593 - 23619642
Alignment:
Q  257 ttttttgacctcattaagtgctatgttaccttaaaccacctataaatacc 306  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23619593 ttttttgacctcattaagtcctatgttaccttaaaccacctataaatacc 23619642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 46815291 - 46815376
Alignment:
Q  295 cctataaatacccct-tcaaacttccccatttcctcacaccatctcacattctcactctcctcatcattccctcctccgtgaatct 379  Q
    ||||||||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||| ||| || |||| || |||||||    
T  46815291 cctataaatacacctctaaaacttccccatttcctcacaccaactcacattctcactctcctcctcactctctcccccatgaatct 46815376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 36173175 - 36173117
Alignment:
Q  298 ataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    |||||||| |||  |||||||||||||||||||||||||||||||||| ||||||||||    
T  36173175 ataaatacacctctaaacttccccatttcctcacaccatctcacattcccactctcctc 36173117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 33163181 - 33163242
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||||||| |||  |||||||||||||||||||||||| |||||||| |||||||||||    
T  33163181 cctataaatacacctctaaacttccccatttcctcacaccaactcacattttcactctcctc 33163242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 344
Target Start/End: Original strand, 372864 - 372916
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacatt 344  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  372864 ccacctataaattcccctccaaacttccccattttctcacaccatctcacatt 372916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 40221137 - 40221193
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctca 348  Q
    |||||| ||||| ||||| ||||||||| ||||||||||||||||||||||||||||    
T  40221137 ccacctgtaaatgcccctccaaacttcctcatttcctcacaccatctcacattctca 40221193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 13855979 - 13855924
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    ||||||||||||| |||| |||| |||| |||||||||||||||||||||||||||    
T  13855979 ccacctataaatatccctccaaaattcctcatttcctcacaccatctcacattctc 13855924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 491 - 548
Target Start/End: Complemental strand, 17212444 - 17212387
Alignment:
Q  491 aaaactaaatgtgcatatttagatttacccagtaaggctggttttcttgtggatttct 548  Q
    |||||||||| |||| |||||| ||||||||| ||||||| |||||||||||||||||    
T  17212444 aaaactaaatctgcagatttagttttacccaggaaggctgattttcttgtggatttct 17212387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 353
Target Start/End: Complemental strand, 24608046 - 24607989
Alignment:
Q  296 ctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctc 353  Q
    ||||||||||||||  ||| || ||||||||||||||||||||||||||| |||||||    
T  24608046 ctataaatacccctctaaattttcccatttcctcacaccatctcacattcccactctc 24607989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 341
Target Start/End: Complemental strand, 40962582 - 40962538
Alignment:
Q  297 tataaataccccttcaaacttccccatttcctcacaccatctcac 341  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||    
T  40962582 tataaatacacctccaaacttccccatttcctcacaccatctcac 40962538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 332
Target Start/End: Complemental strand, 37694449 - 37694374
Alignment:
Q  257 ttttttgacctcattaagtgctatgttaccttaaaccacctataaataccccttcaaacttccccatttcctcaca 332  Q
    ||||| |||||||||||||| |||| |||||||||||||||||||| ||||   || |||||| | ||||||||||    
T  37694449 tttttggacctcattaagtgatatgctaccttaaaccacctataaaaaccctaacatacttcctcttttcctcaca 37694374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 49065442 - 49065387
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||||||| | || ||||||| | ||||||||||||||||||||||||    
T  49065442 ccacctataaatacccttccatacttccctaattcctcacaccatctcacattctc 49065387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 548
Target Start/End: Original strand, 373074 - 373132
Alignment:
Q  491 aaaactaaatgtgcatatttagatttacccagt-aaggctggttttcttgtggatttct 548  Q
    ||||||||||||||| |||||| |||||||  | |||||||||||||||||||||||||    
T  373074 aaaactaaatgtgcagatttagttttaccccatgaaggctggttttcttgtggatttct 373132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 347
Target Start/End: Complemental strand, 14990200 - 14990150
Alignment:
Q  297 tataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    ||||||||||||| ||||||||||||||| | |||||||||||||| ||||    
T  14990200 tataaatacccctccaaacttccccattttcccacaccatctcacactctc 14990150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 1227833 - 1227768
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    ||||||||||||||||||||| ||||| | | ||||||||||||| |||| ||||| | |||||||    
T  1227833 ccacctataaataccccttcatacttctctaattcctcacaccatatcactttctccccctcctca 1227768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 2778146 - 2778211
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||| |||  ||||| | |||||||    
T  2778146 ccacctacaaataccccttcatacttccctatttcctcacaccatatcattttctctccctcctca 2778211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 16524976 - 16524911
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||| |||| ||||| | ||||||||||||||| |||| ||||| | |||||||    
T  16524976 ccacctataaataccctttcatacttctctatttcctcacaccatatcactttctctccctcctca 16524911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 47043715 - 47043650
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| ||||| | |||||||    
T  47043715 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttctccccctcctca 47043650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 360
Target Start/End: Original strand, 42039207 - 42039275
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctcatca 360  Q
    |||||||||||||||| | || ||||| | ||||||||||||||| |||| ||||| | ||||||||||    
T  42039207 ccacctataaatacccatccatacttctctatttcctcacaccatatcactttctctccctcctcatca 42039275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 886925 - 886870
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| |||||    
T  886925 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttctc 886870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 21713061 - 21713006
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    ||||||||| ||||||||||| ||||||| | ||||||| |||||||||| |||||    
T  21713061 ccacctatatataccccttcatacttccctaattcctcaaaccatctcactttctc 21713006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 357
Target Start/End: Complemental strand, 27761026 - 27760972
Alignment:
Q  303 taccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    ||||||| || ||||||| |||||||||||||||||||| ||||| | |||||||    
T  27761026 tacccctccatacttccctatttcctcacaccatctcactttctccccctcctca 27760972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 31936218 - 31936164
Alignment:
Q  293 cacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    ||||||||||||||||| || ||||||| ||||||||||| ||| |||| |||||    
T  31936218 cacctataaatacccctccatacttccctatttcctcacagcatatcactttctc 31936164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 53267308 - 53267369
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||||||| |||  |||||||  ||||||||| || ||| |||||||||||||||||||    
T  53267308 cctataaatacacctctaaacttcttcatttcctcgcagcatttcacattctcactctcctc 53267369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 5e-39; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 252 - 463
Target Start/End: Complemental strand, 23912176 - 23911962
Alignment:
Q  252 tcacattttttgacctcattaagtgctatgttaccttaaaccacctataaataccccttcaaacttccccatttcctcacaccatctcacat--tctcac 349  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||  ||||||    
T  23912176 tcacgttttttgacctcattaagtgctatgttaccttaaaccacctataaatacccctccaaacttctcaatttcctcacaccatctcacattctctcac 23912077  T
Q  350 tctcctcatcattccctcctcc-gtgaatctccnnnnnnnccttctttattttggtgtaaaaagaaaacgaggctaattttgaggataaaaagatgatta 448  Q
    ||| ||| ||| || |||| ||  ||||| ||        ||||||||||||||||||||||||| ||  |||  |  | || |||||||| ||||||||    
T  23912076 tctactcctcactctctccccctatgaatttcattatgttccttctttattttggtgtaaaaagagaaaaaggtcatctctggggataaaatgatgatta 23911977  T
Q  449 gtgagcaactatctt 463  Q
    |||||||||| ||||    
T  23911976 gtgagcaactttctt 23911962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 17399173 - 17399253
Alignment:
Q  252 tcacattttttgacctcattaagtgctatgttaccttaaaccacctataaataccccttcaaacttccccatttcctcaca 332  Q
    |||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  17399173 tcacgttttttgacctcattaagtgttatgttacattaaaccacctataaataccccttcatacttccctatttcctcaca 17399253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 295 - 357
Target Start/End: Original strand, 35054777 - 35054839
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    ||||||||||| |||  |||||||||||||||||||||||| |||||||||||||||||||||    
T  35054777 cctataaatacacctctaaacttccccatttcctcacaccaactcacattctcactctcctca 35054839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 14153705 - 14153770
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| ||||| | |||||||    
T  14153705 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttctccccctcctca 14153770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 293 - 345
Target Start/End: Complemental strand, 11718544 - 11718492
Alignment:
Q  293 cacctataaataccccttcaaacttccccatttcctcacaccatctcacattc 345  Q
    |||||||||||||||||||| ||||||  |||| |||||||||| ||||||||    
T  11718544 cacctataaataccccttcatacttccttattttctcacaccatatcacattc 11718492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 16444618 - 16444673
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    ||||||||||||||||||||| ||||||| | || |||||||||| |||| |||||    
T  16444618 ccacctataaataccccttcatacttccctaattgctcacaccatatcactttctc 16444673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 14830743 - 14830808
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||  | ||||||||||||| |||| ||||| | |||||||    
T  14830743 ccacctataaatacccctccatacttccttaattcctcacaccatatcactttctccccctcctca 14830808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 35053658 - 35053719
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctc 353  Q
    |||||||||||||||||| || ||||||| | || |||||||||| |||| ||||| |||||    
T  35053658 ccacctataaatacccctccatacttccctaattgctcacaccatatcactttctccctctc 35053719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 252 - 341
Target Start/End: Complemental strand, 20149533 - 20149444
Alignment:
Q  252 tcacattttttgacctcattaagtgctatgttaccttaaaccacctataaataccccttcaaacttccccatttcctcacaccatctcac 341  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  20149533 tcacgttttttgacctcattaagtgctatgttaccttaaaccacctataaatacccctccaaacttccccatttcctcacaccttctcac 20149444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 389 - 469
Target Start/End: Complemental strand, 16710073 - 16709993
Alignment:
Q  389 ccttctttattttggtgtaaaaagaaaacgaggctaattttgaggataaaaagatgattagtgagcaactatctttgggaa 469  Q
    ||||||||||||||||||||||||| || ||||| || | || ||||||||||||||||||||||||||||| || |||||    
T  16710073 ccttctttattttggtgtaaaaagagaaagaggcaaaatatggggataaaaagatgattagtgagcaactattttggggaa 16709993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 25685949 - 25685884
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| |||||||||||||||||||| ||||| | |||||||    
T  25685949 ccacctataaatacccctccatacttccctatttcctcacaccatctcactttctctccctcctca 25685884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 293 - 357
Target Start/End: Complemental strand, 2155164 - 2155100
Alignment:
Q  293 cacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||||| ||||||| | |||||||||||||||||| ||||| | |||||||    
T  2155164 cacctataaataccccttcatacttccctaattcctcacaccatctcactttctccccctcctca 2155100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 22494710 - 22494649
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||||||| |||  |||||| | ||||||||||||||| ||||||||||||||||||||    
T  22494710 cctataaatacacctctaaactttcacatttcctcacaccaactcacattctcactctcctc 22494649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 22495800 - 22495735
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    ||||||||||||||||||||| ||||||| | ||||||||||||| |||| ||||| | |||||||    
T  22495800 ccacctataaataccccttcatacttccctaattcctcacaccatatcactttctccccctcctca 22495735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 347
Target Start/End: Complemental strand, 16710139 - 16710087
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    ||||||||||| |||  |||||| |||||||||||||||||||||||||||||    
T  16710139 cctataaatacacctctaaactttcccatttcctcacaccatctcacattctc 16710087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 18394689 - 18394624
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| ||||| | |||||||    
T  18394689 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttctccccctcctca 18394624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 24937293 - 24937244
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcac 341  Q
    |||||||||||||||||| || ||||||| |||| |||||||||||||||    
T  24937293 ccacctataaatacccctccatacttccctattttctcacaccatctcac 24937244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 2195105 - 2195057
Alignment:
Q  257 ttttttgacctcattaagtgctatgttaccttaaaccacctataaatac 305  Q
    ||||| |||||||||||||| |||| ||| |||||||||||||||||||    
T  2195105 tttttggacctcattaagtgttatgctactttaaaccacctataaatac 2195057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 548
Target Start/End: Complemental strand, 20149304 - 20149236
Alignment:
Q  481 cagattgagcaaaactaaatgtgcatatttagatttacc-cagtaaggctggttttcttgtggatttct 548  Q
    ||||||| | ||||||||||||||| |||||| |||||| ||| ||||| | |||||||||||||||||    
T  20149304 cagattgggtaaaactaaatgtgcagatttagttttacctcaggaaggccgattttcttgtggatttct 20149236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 12967571 - 12967636
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||| | | ||||||||||||| |||| ||||| | |||||||    
T  12967571 ccacctataaatacccctccatacttcactaattcctcacaccatatcactttctccccctcctca 12967636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 29132530 - 29132465
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| | ||||||||| ||| |||| ||||| | |||||||    
T  29132530 ccacctataaatacccctccatacttccctaattcctcacaacatatcactttctccccctcctca 29132465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 257 - 345
Target Start/End: Original strand, 3782056 - 3782144
Alignment:
Q  257 ttttttgacctcattaagtgctatgttaccttaaaccacctataaataccccttcaaacttccccatttcctcacaccatctcacattc 345  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  3782056 ttttttgacctcattaagtgttatgttaccttaaatcacctataaatacccctccaaacttcctcattttctcacaccatctcacattc 3782144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 251 - 332
Target Start/End: Original strand, 30858642 - 30858723
Alignment:
Q  251 ctcacattttttgacctcattaagtgctatgttaccttaaaccacctataaataccccttcaaacttccccatttcctcaca 332  Q
    ||||| ||||| || |||||||||||||||| |||||||||||||||||||||||||   ||||||||| | ||||||||||    
T  30858642 ctcacgtttttggatctcattaagtgctatgctaccttaaaccacctataaataccctcacaaacttcctcttttcctcaca 30858723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 45690500 - 45690439
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  45690500 cctataaatacacctctaaacttccccatttcctcacatcatctcacattctcactctcctc 45690439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 50067013 - 50067074
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    |||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  50067013 cctataaatacatctctaaacttccccatttcctcacaccatctcacattctcactctcctc 50067074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 356
Target Start/End: Complemental strand, 5767495 - 5767435
Alignment:
Q  296 ctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    |||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||    
T  5767495 ctataaatacacttccaaacttccccattttctcacaccatctcacattctcactctcctc 5767435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 293 - 356
Target Start/End: Complemental strand, 23602849 - 23602786
Alignment:
Q  293 cacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    |||||||||||| ||||  ||||||||||||||||||||||||| ||| |||||||||||||||    
T  23602849 cacctataaatatccctctaaacttccccatttcctcacaccatttcatattctcactctcctc 23602786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 357
Target Start/End: Original strand, 6086480 - 6086542
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    ||||||||||| |||  |||||||| |||||||||||| ||||||||||||||||||||||||    
T  6086480 cctataaatacacctctaaacttcctcatttcctcacaacatctcacattctcactctcctca 6086542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 5766715 - 5766654
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||||||| ||| ||||||| ||||||| | ||||||||||||||||||||||||||||    
T  5766715 cctataaatacacctccaaactttcccattttcacacaccatctcacattctcactctcctc 5766654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 49597382 - 49597447
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| |||||||||||||||||||| ||||| | |||||||    
T  49597382 ccacctataaatacccctccatacttccctatttcctcacaccatctcactttctccccctcctca 49597447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 453
Target Start/End: Complemental strand, 5767389 - 5767325
Alignment:
Q  389 ccttctttattttggtgtaaaaagaaaacgaggctaattttgaggataaaaagatgattagtgag 453  Q
    ||||||||||||||||||||||||| || ||||| |||| ||||||||||| ||||| |||||||    
T  5767389 ccttctttattttggtgtaaaaagagaaagaggccaattatgaggataaaatgatgagtagtgag 5767325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 389 - 455
Target Start/End: Original strand, 47983945 - 47984011
Alignment:
Q  389 ccttctttattttggtgtaaaaagaaaacgaggctaattttgaggataaaaagatgattagtgagca 455  Q
    ||||||||||||||||||||||||| || ||||| ||||||| | |||||| ||||| |||||||||    
T  47983945 ccttctttattttggtgtaaaaagataaagaggcaaattttgggaataaaatgatgagtagtgagca 47984011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 332
Target Start/End: Complemental strand, 1671270 - 1671189
Alignment:
Q  251 ctcacattttttgacctcattaagtgctatgttaccttaaaccacctataaataccccttcaaacttccccatttcctcaca 332  Q
    ||||| ||||| ||||||||||||||||||| || ||||||||||||| || ||||| | ||||||||| | ||| ||||||    
T  1671270 ctcacgtttttggacctcattaagtgctatgctaacttaaaccacctacaagtacccttacaaacttcctctttttctcaca 1671189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 41871923 - 41871972
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcac 341  Q
    |||||||||||||||||| || ||||||| ||||||||||||||||||||    
T  41871923 ccacctataaatacccctccatacttccctatttcctcacaccatctcac 41871972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 11012328 - 11012383
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||| |||| |||||    
T  11012328 ccacctataaataccctttcatacttccctatttcctcacaccatatcactttctc 11012383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 257 - 304
Target Start/End: Original strand, 22529297 - 22529344
Alignment:
Q  257 ttttttgacctcattaagtgctatgttaccttaaaccacctataaata 304  Q
    ||||||||||||||||| | ||| ||||||||||||||||||||||||    
T  22529297 ttttttgacctcattaaatcctaggttaccttaaaccacctataaata 22529344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 48566948 - 48567003
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||||||||| || | ||||| |||||||||||||||||||| |||||    
T  48566948 ccacctataaatacccctccatatttccctatttcctcacaccatctcactttctc 48567003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 27034240 - 27034301
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||||||| |||  ||||||| |||||||||||||||||||  ||||| ||||||||||    
T  27034240 cctataaatacacctctaaacttctccatttcctcacaccatcttccattcccactctcctc 27034301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 47485740 - 47485805
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| ||||| | |||||||    
T  47485740 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttctccccctcctca 47485805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 47486810 - 47486871
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||||||| |||  ||||||| |||||| ||||| ||| ||||||||||||||||||||    
T  47486810 cctataaatacacctctaaacttctccattttctcactccaactcacattctcactctcctc 47486871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 39650548 - 39650592
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccat 336  Q
    ||||||||||||||||||||| ||||||| | |||||||||||||    
T  39650548 ccacctataaataccccttcatacttccctaattcctcacaccat 39650592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 352
Target Start/End: Original strand, 50065815 - 50065875
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactct 352  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| ||||| ||||    
T  50065815 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttctccctct 50065875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 9343667 - 9343722
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    ||||||||||||| |||| || ||||||| ||||||||||||||| |||| |||||    
T  9343667 ccacctataaatatccctccatacttccctatttcctcacaccatatcaccttctc 9343722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 39222893 - 39222948
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||| ||||||||||||| || ||||||| | |||||||||||||||||| |||||    
T  39222893 ccacgtataaatacccctccatacttccctaattcctcacaccatctcactttctc 39222948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 22605582 - 22605636
Alignment:
Q  251 ctcacattttttgacctcattaagtgctatgttaccttaaaccacctataaatac 305  Q
    ||||| ||||| || ||||||||||| |||| ||||||||||||| |||||||||    
T  22605582 ctcacgtttttggatctcattaagtgttatgctaccttaaaccacgtataaatac 22605636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 18171860 - 18171795
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||| |||||||| |||| || ||||||| | |||||||||||||||||| ||||| | |||||||    
T  18171860 ccacttataaatatccctccatacttccctaattcctcacaccatctcactttctccccctcctca 18171795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 46178830 - 46178895
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    ||||||||||||| |||| || ||||||| ||||| |||||| ||||||| ||||| | |||||||    
T  46178830 ccacctataaatatccctccatacttccctatttcttcacacgatctcactttctccccctcctca 46178895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 292 - 368
Target Start/End: Original strand, 25886223 - 25886299
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctcatcattccctcc 368  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||||    
T  25886223 ccacctataaatatccctccaaacttctccatttcctcacaccatctcacactctcactctcctcctcattctctcc 25886299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 53825783 - 53825844
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||    
T  53825783 cctataaatacacctctaaacttccccatttcctcacaccatctcacattctcactctcctc 53825844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 312 - 463
Target Start/End: Original strand, 6463207 - 6463361
Alignment:
Q  312 aaacttccccatttcctcacaccatctcacattctcactctcctcatcattccctcctccgtgaatctc---cnnnnnnnccttctttattttggtgtaa 408  Q
    |||||||||||||||||||||||||||||||||||||||||| || ||| |  |||| |  ||||||||   |        |||||||||||||||| ||    
T  6463207 aaacttccccatttcctcacaccatctcacattctcactctcatcctcactgtctcccctatgaatctccttctttttttacttctttattttggtgcaa 6463306  T
Q  409 aaagaaaacgaggctaattttgaggataaaaagatgattagtgagcaactatctt 463  Q
    ||||| || ||||| |||| |  |||||||| ||||| |||||||||||| ||||    
T  6463307 aaagagaaagaggccaattctatggataaaatgatgagtagtgagcaactttctt 6463361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 307
Target Start/End: Complemental strand, 12782590 - 12782540
Alignment:
Q  257 ttttttgacctcattaagtgctatgttaccttaaaccacctataaataccc 307  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  12782590 ttttttaacctcattaagtgctatattaccttaaaccacctataaataccc 12782540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 39415536 - 39415601
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| |||||||||||||||||||| ||||| | |||||||    
T  39415536 ccacctataaatacccctccatacttccctatttcctcacaccatctcactttctccccctcctca 39415601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 356
Target Start/End: Original strand, 42948951 - 42949012
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||| |||||||| ||||||    
T  42948951 cctataaatacacctctaaacttccccatttcctcacaccatctcatattctcaccctcctc 42949012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 390 - 548
Target Start/End: Complemental strand, 6755500 - 6755345
Alignment:
Q  390 cttctttattttggtgtaaaaagaaaacgaggctaattttgaggataaaaagatgattagtgagcaactatctttgggaagnnnnnnnnntcagattgag 489  Q
    |||||||||||||||||||||||| || ||||| |||| |  |||||||| ||||| ||||||||| || |||| |||||           || ||||      
T  6755500 cttctttattttggtgtaaaaagagaaagaggccaattctagggataaaatgatgagtagtgagcagctttcttggggaaaaagaac----caaattgga 6755405  T
Q  490 caaaactaaatgtgcatatttagatttacc-cagtaaggctggttttcttgtggatttct 548  Q
     ||||||||||||||| |||||| |||||| ||| |||||||||||||||||||||||||    
T  6755404 taaaactaaatgtgcagatttagttttacctcaggaaggctggttttcttgtggatttct 6755345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 7955564 - 7955504
Alignment:
Q  297 tataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    ||||||||| |||  ||||||| |||||||||||||||||||||||||||||| |||||||    
T  7955564 tataaatacacctctaaacttctccatttcctcacaccatctcacattctcaccctcctca 7955504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 48087033 - 48087088
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||||||||| || ||||||| |||||||||||||||||||| |||||    
T  48087033 ccacctataaatacccctccatacttccctatttcctcacaccatctcactttctc 48087088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 353
Target Start/End: Complemental strand, 6755608 - 6755550
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctc 353  Q
    |||||||||||  ||  |||||| |||||||||||||||||||||| ||||||||||||    
T  6755608 cctataaatacatctctaaactttcccatttcctcacaccatctcatattctcactctc 6755550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 25575017 - 25575071
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattct 346  Q
    |||||||||||||| ||| || ||||||| |||||||||||||||||||| ||||    
T  25575017 ccacctataaatactcctccatacttccctatttcctcacaccatctcactttct 25575071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 295 - 360
Target Start/End: Original strand, 14995381 - 14995446
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctcatca 360  Q
    ||||||||||| |||  ||| || ||||||| |||||||||||||||||| |||| ||||||||||    
T  14995381 cctataaatacacctataaaatttcccattttctcacaccatctcacattttcaccctcctcatca 14995446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 35485597 - 35485652
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| |||||    
T  35485597 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttctc 35485652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Original strand, 42947716 - 42947771
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| |||||    
T  42947716 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttctc 42947771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 292 - 346
Target Start/End: Original strand, 53824643 - 53824697
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattct 346  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| ||||    
T  53824643 ccacctataaatacccctccatacttccctaattcctcacaccatatcactttct 53824697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 32211322 - 32211367
Alignment:
Q  302 ataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    ||||||||  ||||||||||||||| |||||| |||||||||||||    
T  32211322 atacccctcaaaacttccccatttcttcacactatctcacattctc 32211367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 44833779 - 44833843
Alignment:
Q  293 cacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||| || || ||||||| | ||||||||||||| |||| ||||| | |||||||    
T  44833779 cacctataaataccgctccatacttccctaattcctcacaccatatcactttctccccctcctca 44833843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 15976 - 15921
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  15976 ccacctataaataccccttcaaacttcctcatttcctcacaccatctcacattctc 15921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1700 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold1700
Description:

Target: scaffold1700; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 1020 - 959
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    ||||||||||| |||  ||||||||||||||||||||| |||||||||||||||||||||||    
T  1020 cctataaatacacctctaaacttccccatttcctcacaacatctcacattctcactctcctc 959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 20377846 - 20377930
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctcatcattccctcctccgtgaatct 379  Q
    ||||||||||| |||  |||||| |||||||| ||||||||||||||||||||||||||||| ||| || |||| || |||||||    
T  20377846 cctataaatacacctctaaactttcccatttcttcacaccatctcacattctcactctcctcctcactctctcccccatgaatct 20377930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 356
Target Start/End: Original strand, 48219629 - 48219689
Alignment:
Q  296 ctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctc 356  Q
    |||||||||| |||  |||||||||||||||||||||||||||| ||||||||||||||||    
T  48219629 ctataaatacacctctaaacttccccatttcctcacaccatctcgcattctcactctcctc 48219689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 294 - 353
Target Start/End: Original strand, 8725835 - 8725894
Alignment:
Q  294 acctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctc 353  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||| |||||||||||||    
T  8725835 acctataaatacccctccaaactttctcatttcctcacaccatctctcattctcactctc 8725894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 33803069 - 33803144
Alignment:
Q  257 ttttttgacctcattaagtgctatgttaccttaaaccacctataaataccccttcaaacttccccatttcctcaca 332  Q
    ||||| ||||||||||||||||||| |||||||||||| ||||||||||||   ||||||||| | ||||||||||    
T  33803069 tttttggacctcattaagtgctatggtaccttaaaccatctataaataccctcacaaacttcctcttttcctcaca 33803144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 18239323 - 18239258
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| |||||||||||||||||||| ||||| | |||||||    
T  18239323 ccacctataaatacccctccatacttccctatttcctcacaccatctcactttctccccctcctca 18239258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 379
Target Start/End: Complemental strand, 26501035 - 26500952
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctcatcattccctcctccgtgaatct 379  Q
    ||||||||||| |||  ||||||||| |||||||||||| |||||||||||||||||||||| ||| || |||| || |||||||    
T  26501035 cctataaatacacctctaaacttcccaatttcctcacac-atctcacattctcactctcctcctcactctctcccccatgaatct 26500952  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 295 - 379
Target Start/End: Original strand, 26591678 - 26591761
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctcatcattccctcctccgtgaatct 379  Q
    ||||||||||| |||  ||||||||| |||||||||||| |||||||||||||||||||||| ||| || |||| || |||||||    
T  26591678 cctataaatacacctctaaacttcccaatttcctcacac-atctcacattctcactctcctcctcactctctcccccatgaatct 26591761  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 2913201 - 2913147
Alignment:
Q  293 cacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||| |||| ||||||||| ||||| |||||||||||||||||||||    
T  2913201 cacctataaatatccctccaaacttccacattttctcacaccatctcacattctc 2913147  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 48218509 - 48218573
Alignment:
Q  293 cacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    ||||||||||||||||| || ||||||| | |||||||||||||||||| ||||| | |||||||    
T  48218509 cacctataaatacccctccatacttccctaattcctcacaccatctcactttctccccctcctca 48218573  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 1536972 - 1536907
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || ||||||| | ||||||||||||| |||| ||||| | |||||||    
T  1536972 ccacctataaatacccctccatacttccctaattcctcacaccatgtcactttctccccctcctca 1536907  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 548
Target Start/End: Original strand, 21613417 - 21613485
Alignment:
Q  481 cagattgagcaaaactaaatgtgcatatttagatttaccc-agtaaggctggttttcttgtggatttct 548  Q
    ||||||| | ||||||||||||||| |||||| ||||||| |  || ||||||||||||||||||||||    
T  21613417 cagattgggtaaaactaaatgtgcagatttagttttaccctaagaaagctggttttcttgtggatttct 21613485  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 353
Target Start/End: Original strand, 21613217 - 21613273
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctc 353  Q
    ||||||||||| |||  |||||||||| |||||  ||||||||||||||||||||||||    
T  21613217 cctataaatacacctctaaacttccccttttcc--acaccatctcacattctcactctc 21613273  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 41219271 - 41219216
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||||||||| |  ||||||| |||| ||||||||||||||| |||||    
T  41219271 ccacctataaatacccctccttacttccctattttctcacaccatctcactttctc 41219216  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 8261074 - 8261124
Alignment:
Q  294 acctataaataccccttcaaacttccccatttcctcacaccatctcacatt 344  Q
    ||||||||||||||   ||||||||| | ||||||||||||||||||||||    
T  8261074 acctataaataccctcacaaacttcctcttttcctcacaccatctcacatt 8261124  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 14678449 - 14678502
Alignment:
Q  253 cacattttttgacctcattaagtgctatgttaccttaaaccacctataaataccc 307  Q
    ||||||||| ||||||||||||||||||  ||||||| |||||||||||| ||||    
T  14678449 cacatttttagacctcattaagtgctat-ctaccttataccacctataaaaaccc 14678502  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 21153950 - 21153996
Alignment:
Q  295 cctataaataccccttcaaacttccccatttcctcacaccatctcac 341  Q
    ||||||||||||||| || ||||||| ||||||||||||||| ||||    
T  21153950 cctataaatacccctccatacttccctatttcctcacaccatatcac 21153996  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 34354308 - 34354254
Alignment:
Q  293 cacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    ||||||||||||||||| || ||||||| | ||||||||||||| |||| |||||    
T  34354308 cacctataaatacccctccatacttccctaattcctcacaccatatcactttctc 34354254  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 357
Target Start/End: Original strand, 29714490 - 29714555
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || |||| |  ||||||||||||||| |||| ||||| | |||||||    
T  29714490 ccacctataaatacccctccatactttcttatttcctcacaccatatcactttctctccctcctca 29714555  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 38791201 - 38791265
Alignment:
Q  293 cacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||| |||| || ||||||| | ||||||||||||| |||| ||||| | |||||||    
T  38791201 cacctataaatatccctccatacttccctaattcctcacaccatatcactttctccccctcctca 38791265  T

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Target: scaffold0861 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 292 - 347
Target Start/End: Complemental strand, 3606 - 3551
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctc 347  Q
    |||||||||||||||||| || ||||||| | |||||||||||||||||| |||||    
T  3606 ccacctataaatacccctccatacttccctaattcctcacaccatctcactttctc 3551  T

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Target: scaffold1455 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1455
Description:

Target: scaffold1455; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 357
Target Start/End: Complemental strand, 100 - 35
Alignment:
Q  292 ccacctataaataccccttcaaacttccccatttcctcacaccatctcacattctcactctcctca 357  Q
    |||||||||||||||||| || |||| || | ||||||||||||| |||| ||||| | |||||||    
T  100 ccacctataaatacccctccatacttacctaattcctcacaccatatcactttctccccctcctca 35  T

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