View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17562_low_3 (Length: 325)
Name: NF17562_low_3
Description: NF17562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17562_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 5 - 306
Target Start/End: Complemental strand, 24691638 - 24691336
Alignment:
| Q |
5 |
ggtagataatacttgtattatttgcagagttcggcaaacctgaagccacattatgcaatctgtttttctcatatcgctgggatgattctttttaatgttt |
104 |
Q |
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| T |
24691638 |
ggtagttaatacttgtattatttgcagagttcggcaaacctgaagccacattatgcaatctgtttttctcatatcgctgggatgattctttttaatgttt |
24691539 |
T |
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| Q |
105 |
ttctcatatcttaatgttgtttttcatgtttccacttgctttagtatttctttctggaaagatcaagag-nnnnnnnnatgattattaacgcattttgga |
203 |
Q |
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| T |
24691538 |
ttctcatatcttaatgttgtttttcatgtttccacttgctttagtatttctttctggaaagatcaagagtttttttttatgattattaacgcattttgga |
24691439 |
T |
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| Q |
204 |
aacacttgttgtggaatggtaattcaagtgtgcaagcaactgatacatattgggtggttaggctgacaaccatgctgctcaatgacactgtttacatcag |
303 |
Q |
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| T |
24691438 |
aacacttgttgtggaatggtaattcaagtgtgcaagcaactgatacatattgggtggttaggctgacaaccatgctgctcaatgacactgtttacatcag |
24691339 |
T |
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| Q |
304 |
cta |
306 |
Q |
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||| |
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| T |
24691338 |
cta |
24691336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 109 - 285
Target Start/End: Complemental strand, 24640202 - 24640030
Alignment:
| Q |
109 |
catatcttaatgttgtttttcatgtttccacttgctttagtatttctttctggaaagatcaagagnnnnnnnnatgattattaacgcattttggaaacac |
208 |
Q |
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| T |
24640202 |
catatgttaatgttgtttttcaagtttccacttgctttagcttttctttcgggaaagatcaagagtttttttgatgaatattaacacaattttgaaacac |
24640103 |
T |
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| Q |
209 |
ttgttgtggaatggtaattcaagtgtgcaagcaactgatacatattgggtggttaggctgacaaccatgctgctcaa |
285 |
Q |
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| T |
24640102 |
ttgttgtgggatggtatttcaagtgtgaaagcaacatatacagat----tggttaggctgacaactatgctgctcaa |
24640030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 5 - 99
Target Start/End: Complemental strand, 24675536 - 24675442
Alignment:
| Q |
5 |
ggtagataatacttgtattatttgcagagttcggcaaacctgaagccacattatgcaatctgtttttctcatatcgctgggatgattctttttaa |
99 |
Q |
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| T |
24675536 |
ggtagttaatacgtgtattatttgcagagttcagcaaacctgaagccacattatgcagcctgtttttctcatatagctgggatgattctttttaa |
24675442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 24640437 - 24640344
Alignment:
| Q |
5 |
ggtagataatacttgtattatttgcagagttcggcaaacctgaagccacattatgcaatctgtttttctcatatcgctgggatgattcttttta |
98 |
Q |
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| T |
24640437 |
ggtagttaatacatgtattatttgcagagttcagcaaacctgaagcgacattatgcaacctgtttttcacctatcgtagggatgattcttttta |
24640344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 24685910 - 24685815
Alignment:
| Q |
190 |
taacgcattttggaaacacttgttgtggaatggtaattcaagtgtgcaagcaactgatacatattgggtggttaggctgacaaccatgctgctcaa |
285 |
Q |
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|||| ||||||| |||| |||||| | | || ||||||||||||||| ||||| |||||| |||||||||||||||||||||| ||||||||||| |
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| T |
24685910 |
taacacattttgaaaacgcttgttttcggattgtaattcaagtgtgctggcaacagatacagattgggtggttaggctgacaactatgctgctcaa |
24685815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 24686295 - 24686216
Alignment:
| Q |
18 |
tgtattatttgcagagttcggcaaacctgaagccacattatgcaatctgtttttctcatatcgctgggatgattcttttt |
97 |
Q |
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| T |
24686295 |
tgtattatttgcagaattcagcaaacatcaagcaatattatgcaacctgtttttctcgtatcgctggaatggttcttttt |
24686216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 24652417 - 24652352
Alignment:
| Q |
6 |
gtagataatacttgtattatttgcagagttcggcaaacctgaagccacattatgcaatctgttttt |
71 |
Q |
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| T |
24652417 |
gtagttaatacatgtattatttgcagagttcagcaaaaatcaagcaatattatgcaacctgttttt |
24652352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 4037570 - 4037617
Alignment:
| Q |
49 |
gccacattatgcaatctgtttttctcatatcgctgggatgattctttt |
96 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
4037570 |
gccacattatgcaacctgtttttctcatatcgttgggatgattctttt |
4037617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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