View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17562_low_6 (Length: 306)
Name: NF17562_low_6
Description: NF17562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17562_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 288
Target Start/End: Original strand, 42539916 - 42540195
Alignment:
| Q |
9 |
agaagcaaaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatcttgtgaggcagcttgacgaaattcaat |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42539916 |
agaagccaaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatcttgtgaggcagcttgacgaaattcaat |
42540015 |
T |
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| Q |
109 |
gtcgttctcattgacgtgacatcttgcgttatcttgttgaatgaaaattggttggcctatttcatctcttggccacttttcttttatggcaggaataact |
208 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
42540016 |
gtcgttctcattgacgtgacatcttgcgttatcctgttgaatgaaaattggttggcctatttcatctcttggccacttttgttttatggcaggaataact |
42540115 |
T |
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| Q |
209 |
ttttcgatcaaaaactttctacaaacttctctattgactgaagtgatgaattttgtttcaagagttcctgcaactctatt |
288 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42540116 |
ttttcgatcaaaaactttctacaaatttctctattgactgaagtgatggattttgtttcaagagttcctgcaactctatt |
42540195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 37934262 - 37934218
Alignment:
| Q |
16 |
aaggtctaagacatttagttcaggggaattgggaggttgacacat |
60 |
Q |
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|||||||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
37934262 |
aaggtctaagacatttagatcaggagaatttggaggttgacacat |
37934218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 1329638 - 1329359
Alignment:
| Q |
9 |
agaagcaaaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatcttgtgaggcagcttgacgaaattcaat |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1329638 |
agaagccaaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatcttgtgaggcagcttgacgaaattcaat |
1329539 |
T |
|
| Q |
109 |
gtcgttctcattgacgtgacatcttgcgttatcttgttgaatgaaaattggttggcctatttcatctcttggccacttttcttttatggcaggaataact |
208 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1329538 |
gtcgttctcattgacgtgacatcttgcgttatcctgttgaatgaaaattggttggcctatttcatctcttggccacttttgttttatggcaggaataact |
1329439 |
T |
|
| Q |
209 |
ttttcgatcaaaaactttctacaaacttctctattgactgaagtgatgaattttgtttcaagagttcctgcaactctatt |
288 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1329438 |
ttttcgatcaaaaactttctacaaatttctctattgactgaagtgatggattttgtttcaagagttcctgcaactctatt |
1329359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 10328648 - 10328604
Alignment:
| Q |
16 |
aaggtctaagacatttagttcaggggaattgggaggttgacacat |
60 |
Q |
| |
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|||||||||||||||||| ||||| ||||| |||||||||||||| |
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| T |
10328648 |
aaggtctaagacatttagatcaggagaatttggaggttgacacat |
10328604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 17783099 - 17783371
Alignment:
| Q |
16 |
aaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatcttgtgaggcagcttgacgaaattcaatgtcgttc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17783099 |
aaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatcttgtgaggaagcttgacgaaattcaatgtcgttc |
17783198 |
T |
|
| Q |
116 |
tcattgacgtgacatcttgcgttatcttgttgaatgaaaattggttggcctatttcatctcttggccacttttcttttatggcaggaataactttttcga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17783199 |
tcattgacgtgacatcttgcgttatcttgttgaatgaaaattggttggcctattttatctcttggccacttttcttttatgacaggaataactttttcga |
17783298 |
T |
|
| Q |
216 |
tcaaaaactttctacaaacttctctattgactgaagtgatgaattttgtttcaagagttcctgcaactctatt |
288 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
17783299 |
tcaaaaactttctacaaacttctctattgactgaagtgatggattttgtttcaagagttcctgcaactctatt |
17783371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 288
Target Start/End: Complemental strand, 17651063 - 17650784
Alignment:
| Q |
9 |
agaagcaaaggtctaagacatttagttcaggggaattgggaggttgacacatcagtcgaatgtcgaacccatcttgtgaggcagcttgacgaaattcaat |
108 |
Q |
| |
|
|||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
17651063 |
agaagccaaggtctaagacatttagttcaagggaattgggaggttgacacatcaatcgaatgtcgaaaccatcttgtgaggcagcttgacgaaattcaat |
17650964 |
T |
|
| Q |
109 |
gtcgttctcattgacgtgacatcttgcgttatcttgttgaatgaaaattggttggcctatttcatctcttggccacttttcttttatggcaggaataact |
208 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
17650963 |
gttgttctcattgacgtgacatcttgcgttatcttgttgaatgaaaattggttggcctatttcatctcttggacacttttcttttatggttggaataact |
17650864 |
T |
|
| Q |
209 |
ttttcgatcaaaaactttctacaaacttctctattgactgaagtgatgaattttgtttcaagagttcctgcaactctatt |
288 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
17650863 |
ttttcgatcaaaaactttctacagtcttctctattcactgaagtgatggattttgtttcaagagttcctgcgactctatt |
17650784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 384705 - 384661
Alignment:
| Q |
16 |
aaggtctaagacatttagttcaggggaattgggaggttgacacat |
60 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
384705 |
aaggtctaagacatttagatcaggggaatttggaggttgacacat |
384661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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