View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17562_low_9 (Length: 243)
Name: NF17562_low_9
Description: NF17562
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17562_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 31152602 - 31152489
Alignment:
| Q |
35 |
caagccaactataacttacaaggataaaataaaattttaatttcatttttcaacttcaactatcatatacgcaagtttataatcaatgtaaaataatcaa |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31152602 |
caagccaactataacttacaaggataaaataaaattttaatttcatttttcaacttcaactatcatatacgcaagtttataatcaatgtaaaataatcaa |
31152503 |
T |
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| Q |
135 |
tattttgtatctct |
148 |
Q |
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|||||||||||||| |
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| T |
31152502 |
tattttgtatctct |
31152489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 31171164 - 31171051
Alignment:
| Q |
35 |
caagccaactataacttacaaggataaaataaaattttaatttcatttttcaacttcaactatcatatacgcaagtttataatcaatgtaaaataatcaa |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31171164 |
caagccaactataacttacaaggataaaataaaattttaatttcatttttcaacttcaactatcatatacgcaagtttataatcaatgtaaaataatcaa |
31171065 |
T |
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| Q |
135 |
tattttgtatctct |
148 |
Q |
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|||| ||||||||| |
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| T |
31171064 |
tattctgtatctct |
31171051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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