View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17563_high_2 (Length: 559)
Name: NF17563_high_2
Description: NF17563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17563_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 106; Significance: 9e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 146 - 410
Target Start/End: Original strand, 36187617 - 36187889
Alignment:
| Q |
146 |
gtatttcggatgaaccctccctgttaaagatggtacgtactgaaagagaggtgtatagtttttccgtttacgtcattg------------------atat |
227 |
Q |
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| T |
36187617 |
gtatttcggatgaaccctccttgttgaagatggtacgtactgaaagagaggtgtatagtttttccgtttatgtcattggttatgttgacagcttggatat |
36187716 |
T |
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| Q |
228 |
tgtatcctgaaagagaggtatagtgtgtacttataatattaagacgcaacatgacattttcttttggggacgtagtggtacacatttttaaatgtaaaga |
327 |
Q |
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| T |
36187717 |
tgtatcctgaaagagaggtatagtgtgtacttataatattaagacacaacttgaca-tttgttatggggaagtagtggttcacatttttaaat-----ga |
36187810 |
T |
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| Q |
328 |
cttttattaactaattaaaattagggtgtatacatcatcatgattttttgtcta---attaagatgtgtattgagattaattaaat |
410 |
Q |
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| T |
36187811 |
cttgtattaac------aaattagggtgtatacatcatcatg-gtttttgtctaattattatgatgtgtattgagattaattaaat |
36187889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 36187187 - 36187319
Alignment:
| Q |
13 |
aatattatgtagagtaaatgcccaataatatatattctgaaaaatacagctatatatagttgactatggtgtcaacgcccatgttgtacacattacctag |
112 |
Q |
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| T |
36187187 |
aatattatgcagagtaaatgcccaataatatttcgacggaaaaatacagctatatatagttgaccatggtgtcaacgcccatgttgtacacattacctag |
36187286 |
T |
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| Q |
113 |
ttaatatcattatgctataagatcttaattaat |
145 |
Q |
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| T |
36187287 |
ttagtatcattatggtataagatcttaattaat |
36187319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 402 - 494
Target Start/End: Original strand, 36188301 - 36188394
Alignment:
| Q |
402 |
taattaaataaacaa-caacatattttcgcattttaatgtgaaaatgattcggaatttgtagtctatggtgtaataatcaaaccaatgatttct |
494 |
Q |
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| T |
36188301 |
taattaaatagacaaacaacatattttcgcattttaatgtgaaaataattaggattttgtagtctagggtgtaataatcaaaccaatgatttct |
36188394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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