View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17563_high_6 (Length: 442)
Name: NF17563_high_6
Description: NF17563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17563_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 8856902 - 8857328
Alignment:
| Q |
1 |
acaccatgagaaaaaataaataaaatatatgatatgttagtgacgtgataggaagagagatagaagacacgtaagacgttaaattattatataaaattta |
100 |
Q |
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| T |
8856902 |
acaccatgagaaaaaataaataaaatatatgatatgttagtgacgtgataggaagagagatagaagacacataaggcgttaaattattgtataaaattta |
8857001 |
T |
|
| Q |
101 |
gaaatgttcaaatatacgagttgtaataagctttaccgcttcactcactgctcacatcttgcttagtggcattttttgggtacagaaacatgctattttc |
200 |
Q |
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| T |
8857002 |
gaaatgttcaaatatacgagttgtaataagctttaccgcttcactcactgctcacatcttgctcagtggcattttttgggtacagaaacatgctattttc |
8857101 |
T |
|
| Q |
201 |
ttctcttgaagttggctcagtggggctcaaatagattaata-tagagctatgtgacatttcaccattcatatgattatatctattgttagaccgttaagt |
299 |
Q |
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| T |
8857102 |
ttctcttgaagttggcttagtggggctcaaatagattaatattagagctatgtgacatttcaccattcatatgattatatctattgttagaccgttaagt |
8857201 |
T |
|
| Q |
300 |
gtataaaccgaaagtgactgattgtgccaacagcctaaccttgtattctttttcaccttataatgttaaaaaataatggcggaaagtgaaagtttaagcg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8857202 |
gtataaaccgaaagtgactgattgtgccaacagcctaaccttgtattctttttcaccttataatgttaaaaaataatggcggaaagtgaaagtttaagcg |
8857301 |
T |
|
| Q |
400 |
aggtgagacgtaagtatcctaattact |
426 |
Q |
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| T |
8857302 |
aggtgagacgtaagtatcctaattact |
8857328 |
T |
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