View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17563_low_10 (Length: 345)
Name: NF17563_low_10
Description: NF17563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17563_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 1178210 - 1178533
Alignment:
| Q |
1 |
atcttaagcattgctcattcgcataatcataaattaaacacaaccagttcaagatatttaagatgaatgatttcattgaatacaacaattacttgtataa |
100 |
Q |
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| T |
1178210 |
atcttaagcattgctcattcgcataatcataaattaaacacaaccagttcaaggtatttaagatgaatgatttcattgaatacaacaattacttgtataa |
1178309 |
T |
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| Q |
101 |
gtcttttttggcttggagtcctaattccaaaaggcatttaccaatgcaaaattgaaaggatttcgaattgaatttgcttctatgatgtgctttgttagct |
200 |
Q |
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| T |
1178310 |
gtcttttttggcttggagtcctaattccaaaaggcatttaccaatgcaaaattgaaaggatttcaaattgaaattgcttctatgatgtactac------- |
1178402 |
T |
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| Q |
201 |
cagcttaatttctttttaagttagcttaatttctttttggcattcattccttgnnnnnnn-aggccggctttcatttcattttatcaggcttgtacgttt |
299 |
Q |
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| T |
1178403 |
------aatgctttgttagctcagcttaatttctttttggctttcattccttgttttttttaggccggctttcatttcattttatcaggcttgtacgttt |
1178496 |
T |
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| Q |
300 |
ggctcattttcttctatgttagcttaattttgttcat |
336 |
Q |
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| T |
1178497 |
ggctcattttcttctatgttagcttaattttgttcat |
1178533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 35050081 - 35050195
Alignment:
| Q |
71 |
tttcattgaatacaacaattacttgtataagtcttttttggcttggagtcctaattccaaaaggcatttaccaatgcaaaattgaaaggatttcgaattg |
170 |
Q |
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| T |
35050081 |
tttcatttaatacaacaattgcttgtattagtcttttt-ggctttgagtctcaattccaaaaagcatttaccaatgcaaaattcaaagaatttcaaattg |
35050179 |
T |
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| Q |
171 |
aatttgcttctatgat |
186 |
Q |
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| T |
35050180 |
aaattgcttctatgat |
35050195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 14663475 - 14663432
Alignment:
| Q |
107 |
tttggcttggagtcctaattccaaaaggcatttaccaatgcaaa |
150 |
Q |
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| T |
14663475 |
tttggctttgagtctcaattccaaaaggcatttaccaatgcaaa |
14663432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 8533522 - 8533440
Alignment:
| Q |
106 |
ttttggcttggagtcctaattccaaaaggcatttaccaatgcaaaattgaaaggatttcgaattgaatttgcttctatgatgt |
188 |
Q |
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| T |
8533522 |
ttttggctttgaatcacaattccaaaaatcatttaccaatgcaaaattcaaagaatttcaagtagaagtttcttctatgatgt |
8533440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 26304281 - 26304361
Alignment:
| Q |
106 |
ttttggcttggagtcctaattccaaaaggcatttaccaatgcaaaattgaaaggatttcgaattgaatttgcttctatgat |
186 |
Q |
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||||||||| ||||| |||||||||| |||||||||||||||||| |||| ||||| | | ||| |||| |||||||| |
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| T |
26304281 |
ttttggctttgagtcacaattccaaaaattatttaccaatgcaaaattcaaagaatttcaagtagaagttgcctctatgat |
26304361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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