View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17563_low_11 (Length: 328)
Name: NF17563_low_11
Description: NF17563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17563_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 313
Target Start/End: Complemental strand, 22043714 - 22043413
Alignment:
| Q |
11 |
cacagacgcaatattcaatcacttctatattcttacataattattggtgtccacttgccagtgtcaatgtcgtgtccggtatccatctatataaattaaa |
110 |
Q |
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| T |
22043714 |
cacagacgcaatattcaatcacttctatattcttaaataattattgttgttcacttgccagtgtcaatgtcgtgtccggtatccatctatataaattaaa |
22043615 |
T |
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| Q |
111 |
gtcttacttgtatatcaacaaggaaaactaggcgtaagagcaagtccattaatttcttgcctggttc--nnnnnnnnngaataaatttcttgcttggttc |
208 |
Q |
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| T |
22043614 |
gtcttacttgtatatcaacaaggaaaactaggcgtaagtgcaagtccattaatttcttgattggttctttttttttttgaataaatttcttgcttggttc |
22043515 |
T |
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| Q |
209 |
aggctctccttgccactgcttccatgcatcagagcctcatgatgagtgaagacttcagaacatagctgatttgctttttcaacgagactgtgaatgcagt |
308 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22043514 |
tggctctccttgccactgcttccatgcatcagagcc---taatgagtgaagacttcagaacatagctgatttgctttttcaacgagactgtgaatgcagt |
22043418 |
T |
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| Q |
309 |
aaaaa |
313 |
Q |
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||||| |
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| T |
22043417 |
aaaaa |
22043413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 192 - 313
Target Start/End: Original strand, 2423861 - 2423977
Alignment:
| Q |
192 |
aatttcttgcttggttcaggctctccttgccactgcttccatgcatcagagcctcatgatgagtgaagacttcagaacatagctgatttgctttttcaac |
291 |
Q |
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| T |
2423861 |
aatttcttgcttggttctggctctccttgccactgcttccatgcatcag--cctcatgc---gtgaagacttcagaacagagctgatttgctttttcaac |
2423955 |
T |
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| Q |
292 |
gagactgtgaatgcagtaaaaa |
313 |
Q |
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| T |
2423956 |
aagactgtgaatgcagtaaaaa |
2423977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 2423492 - 2423583
Alignment:
| Q |
11 |
cacagacgcaatattcaatcacttctatattcttacataattattggtgtccacttgccagtgtcaatgtcgtgtccggtatccatctatat |
102 |
Q |
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| T |
2423492 |
cacagacgcaatattcaatcacttctatattcttagattattattggtgtccactagccagtgtcaatgtcgtgtctggtatccatttatat |
2423583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 2423800 - 2423877
Alignment:
| Q |
100 |
tataaattaaagtcttacttgtatatcaacaaggaaaactaggcgtaagagcaagtccattaatttcttgcctggttc |
177 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
2423800 |
tataaattaaagccttacttgtatatcaacaaggaaaactaggcgtaggagcaagtccattaatttcttgcttggttc |
2423877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 7272053 - 7272089
Alignment:
| Q |
113 |
cttacttgtatatcaacaaggaaaactaggcgtaaga |
149 |
Q |
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||||||| |||||||||||| |||||||||||||||| |
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| T |
7272053 |
cttacttatatatcaacaagcaaaactaggcgtaaga |
7272089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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