View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17563_low_15 (Length: 275)
Name: NF17563_low_15
Description: NF17563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17563_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 4642105 - 4641866
Alignment:
| Q |
17 |
aattgagttataccgatgaaatcaacgatgaggcggccatcagagcagcgtccattgggatgatgaaaatgggttttaccgtaaggagggatcagacaat |
116 |
Q |
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| T |
4642105 |
aattgagttataccgatgaaatcaacgatgaggcggccatcagagcagcgtccattgggatgatgaaaatgggttttaccgtaaggagggagcagacaat |
4642006 |
T |
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| Q |
117 |
tggggctctgtggttgggaaatgaaatacaagtttccggtatcagtgagggaatctccgaagctgaagattgaagagtagcaactagtagcagcagtagt |
216 |
Q |
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| T |
4642005 |
cggggctctgtggttgggaaatgaaatacaagtttccggtatcagtgagggaatctccgaagctgaagattgaagagtagcaactagtagcagcagtagt |
4641906 |
T |
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| Q |
217 |
aaaaaccagtggcagaacaatgaataacaaccattgttgttgg |
259 |
Q |
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| T |
4641905 |
aaaaaccagtggcagaacaatgaat---aaccattgttgttgg |
4641866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 4633108 - 4633049
Alignment:
| Q |
25 |
tataccgatgaaatcaacgatgaggcggccatcagagcagcgtccattgggatgatgaaa |
84 |
Q |
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| T |
4633108 |
tataccgatgaaatcaatgatgaggcgtccatcggagcaacgtccagacggatgatgaaa |
4633049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 193
Target Start/End: Complemental strand, 4654240 - 4654185
Alignment:
| Q |
138 |
tgaaatacaagtttccggtatcagtgagggaatctccgaagctgaagattgaagag |
193 |
Q |
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| T |
4654240 |
tgaaatacaagttgccggtgtcggcgagggaatcaccgaagctgaagatggaagag |
4654185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 4654351 - 4654294
Alignment:
| Q |
27 |
taccgatgaaatcaacgatgaggcggccatcagagcagcgtccattgggatgatgaaa |
84 |
Q |
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| T |
4654351 |
taccgatgaaatcaatgatgaggcgtccatcggagcaacgtccagacggatgatgaaa |
4654294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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