View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17563_low_19 (Length: 246)
Name: NF17563_low_19
Description: NF17563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17563_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 39616508 - 39616275
Alignment:
| Q |
1 |
aatggaagattggcctttgcttctgctttcgctcttcttcatcatcatcatcatttctaccacactttttatttgaactaaacaagctagtcgtcatatt |
100 |
Q |
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| T |
39616508 |
aatggaagattggcctttgattctgctttcgctcttcttcatcatcatcatcatttctaccacgctttttatttgaactaaacaagctagtcatcatatt |
39616409 |
T |
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| Q |
101 |
tgaaagcctgcatttaaagtttaactacattatattattgaaaatttacatagaaaagagagtaaatatatcaacacatacatcattacaatcaaaataa |
200 |
Q |
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| T |
39616408 |
tgaaagtctgcatt-aatgttttactacattatattattgaaaatttacatagaaaagagagtaaatatatcaacacatacatcattacaatcaaaataa |
39616310 |
T |
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| Q |
201 |
aaatcttgaaacacatatcaagtttcctgagaatt |
235 |
Q |
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| T |
39616309 |
aaatctttaaacacatatcaagtttcctgagaatt |
39616275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 39627220 - 39626997
Alignment:
| Q |
11 |
tggcctttgcttctgctttcgctcttcttcatcatcatcatcatttctaccacactttttatttgaactaaacaagctagtcgtcatatttgaaagcctg |
110 |
Q |
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| T |
39627220 |
tggcctttgcttctgctttcgctcttcttcatcatcatcatcatttctaccacgtttattatttgaactaaacaagctagttgtcatacttgaaagtctg |
39627121 |
T |
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| Q |
111 |
catttaaagtttaactacattatattattgaaaatttacatagaaaagagagtaa--atatatcaacacatacatcattacaatcaaaataaaaatcttg |
208 |
Q |
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| T |
39627120 |
ca-ttaatgtttaactacattatattattggaaatttacatagaaaagagagtaaatatatatcaacacatatatcattacaatcaaaataaaaatattc |
39627022 |
T |
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| Q |
209 |
aaacacatatcaagtttcctgagaatt |
235 |
Q |
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| T |
39627021 |
aaacac--atcaattttcctgagaatt |
39626997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 39583745 - 39583808
Alignment:
| Q |
49 |
catcatttctaccacactttttatttgaactaaacaagctagtcgtcatatttgaaagcctgca |
112 |
Q |
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| T |
39583745 |
catcatttccaccacgttttttattcgaactaaacacgctatttgtcatacttgaaagcctgca |
39583808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 47532710 - 47532621
Alignment:
| Q |
42 |
tcatcatcatcatttctaccacactttttatttgaactaaacaagctagtcgtcatatttgaaagcctgcatttaaagtttaactacatta |
132 |
Q |
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| T |
47532710 |
tcatcgtcatcatttctacctcgttttttatttgagctaaacaagctaggggtcatgcttgaaatcctgca-ttaaagtttagctacatta |
47532621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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