View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17563_low_20 (Length: 245)

Name: NF17563_low_20
Description: NF17563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17563_low_20
NF17563_low_20
[»] chr1 (6 HSPs)
chr1 (1-224)||(23802515-23802738)
chr1 (68-137)||(5346039-5346108)
chr1 (73-145)||(4524587-4524659)
chr1 (73-130)||(25071642-25071699)
chr1 (68-143)||(6886585-6886660)
chr1 (62-128)||(3889965-3890033)
[»] chr2 (8 HSPs)
chr2 (68-145)||(16389468-16389545)
chr2 (63-146)||(1001372-1001455)
chr2 (68-125)||(14433832-14433889)
chr2 (77-133)||(8686901-8686957)
chr2 (70-147)||(8083803-8083880)
chr2 (85-137)||(32484062-32484114)
chr2 (69-128)||(11814069-11814128)
chr2 (69-133)||(10680112-10680176)
[»] chr4 (7 HSPs)
chr4 (68-139)||(12141772-12141843)
chr4 (68-139)||(43698766-43698835)
chr4 (67-138)||(45036764-45036835)
chr4 (73-130)||(789788-789845)
chr4 (63-139)||(4341976-4342053)
chr4 (71-131)||(55264893-55264953)
chr4 (68-134)||(2113416-2113482)
[»] chr6 (3 HSPs)
chr6 (69-144)||(22719342-22719417)
chr6 (66-144)||(22712197-22712275)
chr6 (73-130)||(12521940-12521997)
[»] chr5 (5 HSPs)
chr5 (63-144)||(21144679-21144760)
chr5 (73-130)||(15030471-15030528)
chr5 (57-121)||(7471445-7471509)
chr5 (73-130)||(30316527-30316584)
chr5 (78-132)||(15925888-15925942)
[»] chr7 (3 HSPs)
chr7 (68-146)||(40773404-40773482)
chr7 (79-143)||(31311983-31312047)
chr7 (83-134)||(786234-786285)
[»] chr3 (4 HSPs)
chr3 (68-125)||(26609799-26609856)
chr3 (80-139)||(47190195-47190254)
chr3 (69-139)||(39493283-39493353)
chr3 (75-129)||(8167458-8167512)
[»] chr8 (5 HSPs)
chr8 (68-134)||(23431718-23431784)
chr8 (88-131)||(566990-567032)
chr8 (76-133)||(4173851-4173908)
chr8 (68-139)||(34678416-34678487)
chr8 (83-134)||(38753439-38753490)
[»] scaffold0111 (1 HSPs)
scaffold0111 (69-111)||(47975-48017)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 23802738 - 23802515
Alignment:
Q  1 tcctaatttcctatagacacaaaatcaattctggtaactgttaaaccaaacacacgcttagtagccggtctcccgagaagtcacttggttgagagtttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23802738 tcctaatttcctatagacacaaaatcaattctggtaactgttaaatcaaacacacgcttagtagcctgtctcccgagaagtcacttggttgagagtttct 23802639  T
Q  101 ctcttcaacctcaagaaactcggttcgagacccggcacccagagaaacagacgtttagtaaacctttaaatgggttggggaagcagggtttagttggtat 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23802638 ctcttcaacctcgagaaactcggttcgagacccggcacccagagaaacagacgtttagtaaacctttaaatgggttggggaagcagggtttagttggtat 23802539  T
Q  201 aagttgtttataatctcttgatat 224  Q
    ||||||||||||||||||||||||    
T  23802538 aagttgtttataatctcttgatat 23802515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 137
Target Start/End: Complemental strand, 5346108 - 5346039
Alignment:
Q  68 gtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggca 137  Q
    |||||||||||||||||||||||||||||||||||||||||| |  || |||||||||||||| ||||||    
T  5346108 gtctcccgagaagtcacttggttgagagtttctctcttcaactttgaggaactcggttcgagaaccggca 5346039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 4524587 - 4524659
Alignment:
Q  73 ccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacccagaga 145  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||||    
T  4524587 ccgagaaatcatttggttgagagtttctctcttcaaccttaagaaactcggttcgaaacccgacaccgagaga 4524659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 25071642 - 25071699
Alignment:
Q  73 ccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgaga 130  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||||||||||| ||||    
T  25071642 ccgagaagtcatttggttgagagtttctcttttcaatctcaagaaactcggtttgaga 25071699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 6886585 - 6886660
Alignment:
Q  68 gtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacccaga 143  Q
    ||||||||||   |||||||||||| ||||||||||||||||||| |||||||||||| || ||||| || |||||    
T  6886585 gtctcccgaggtatcacttggttgaaagtttctctcttcaacctcgagaaactcggtttgaaacccgacagccaga 6886660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 128
Target Start/End: Complemental strand, 3890033 - 3889965
Alignment:
Q  62 tagccggtctcccgagaagtcacttggttgagag--tttctctcttcaacctcaagaaactcggttcga 128  Q
    ||||| |||||||||||||| |||||||||||||  ||| ||||||||||||  |||||||||||||||    
T  3890033 tagcctgtctcccgagaagtaacttggttgagagagtttatctcttcaaccttgagaaactcggttcga 3889965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 145
Target Start/End: Original strand, 16389468 - 16389545
Alignment:
Q  68 gtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacccagaga 145  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||||||||||| |||||||    
T  16389468 gtctcccgagaagtcacttggttgatagtttctctcttcaaccccgagaaactcggtttgagacccggcaaccagaga 16389545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 63 - 146
Target Start/End: Original strand, 1001372 - 1001455
Alignment:
Q  63 agccggtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacccagagaa 146  Q
    |||| |||| |||| | ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||||    
T  1001372 agcctgtcttccgaaaggtcacttggttgagaatttctctcttcaacctcgagaaactcggttcgagacccggcatcgagagaa 1001455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 14433832 - 14433889
Alignment:
Q  68 gtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggtt 125  Q
    |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  14433832 gtctcctgagaagtcacttggttgagagtttctctcttcaacctcgagaaactcggtt 14433889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 8686957 - 8686901
Alignment:
Q  77 gaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagaccc 133  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  8686957 gaagtcacttggttgagagtttctctcttcatcctcgagaaactcggttcgagaccc 8686901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 8083880 - 8083803
Alignment:
Q  70 ctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacccagagaaa 147  Q
    ||||||||||||||| | |||||||||||||||||| |||||  |||||||||||| |||||||| ||  ||||||||    
T  8083880 ctcccgagaagtcacgtagttgagagtttctctctttaaccttgagaaactcggtttgagacccgacaatcagagaaa 8083803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 32484114 - 32484062
Alignment:
Q  85 ttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggca 137  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||| ||||    
T  32484114 ttggttgagagtttctctcttcaacctcgagaaactcggtttgagacctggca 32484062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 11814128 - 11814069
Alignment:
Q  69 tctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcga 128  Q
    |||| ||||| |||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  11814128 tctcacgagaggtcatttggttgagagtttctctcttcaacctcgagaaactcagttcga 11814069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 10680176 - 10680112
Alignment:
Q  69 tctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagaccc 133  Q
    |||| |||||||| || |||||||||| | ||||||||||||||||  |||||||||||||||||    
T  10680176 tctctcgagaagttacgtggttgagagatactctcttcaacctcaaagaactcggttcgagaccc 10680112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 12141843 - 12141772
Alignment:
Q  68 gtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacc 139  Q
    |||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||    
T  12141843 gtctcccgagaagttacttggttgagagtatctctcttcaacctcgagaaactcggtttgagacccggcacc 12141772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 43698766 - 43698835
Alignment:
Q  68 gtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacc 139  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||| ||||||||||||    
T  43698766 gtctcccgagaagtcacttggttgaga--ttctctcttcaacctcaagaaacttggttcaagacccggcacc 43698835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 45036835 - 45036764
Alignment:
Q  67 ggtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcac 138  Q
    |||||||||||||||||| ||||||||||||||||||||||||||   |||||||||||||||||| |||||    
T  45036835 ggtctcccgagaagtcacatggttgagagtttctctcttcaaccttgtgaaactcggttcgagacctggcac 45036764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 789845 - 789788
Alignment:
Q  73 ccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgaga 130  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||    
T  789845 ccgagaagtcatttggttgagagtttctcttttcaatctcaagaaactcggttcgaga 789788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 139
Target Start/End: Complemental strand, 4342053 - 4341976
Alignment:
Q  63 agccggtctcccgagaagtc-acttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacc 139  Q
    |||| ||||||||||||||| || ||||||||||   |||||||||||||| ||||||||||||| ||||||||||||    
T  4342053 agcctgtctcccgagaagtccacgtggttgagagaaactctcttcaacctcgagaaactcggttcaagacccggcacc 4341976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Original strand, 55264893 - 55264953
Alignment:
Q  71 tcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagac 131  Q
    ||||||||||||| |||||||||||   ||||||||||||||||| |||||||||||||||    
T  55264893 tcccgagaagtcatttggttgagagaaactctcttcaacctcaaggaactcggttcgagac 55264953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 134
Target Start/End: Complemental strand, 2113482 - 2113416
Alignment:
Q  68 gtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccg 134  Q
    |||||||||||||||| ||||| |||||||||| ||||||| ||  | ||| |||||| ||||||||    
T  2113482 gtctcccgagaagtcatttggtagagagtttctatcttcaatcttgaaaaagtcggtttgagacccg 2113416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 69 - 144
Target Start/End: Original strand, 22719342 - 22719417
Alignment:
Q  69 tctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacccagag 144  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||| | |||||||||||| ||||| ||||    
T  22719342 tctcccgagaagtcacttggttgagagtttctcttttcaacctgaagaaagttggttcgagacccagcaccgagag 22719417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 22712275 - 22712197
Alignment:
Q  66 cggtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacccagag 144  Q
    |||| ||||||||||||| |||||| ||||| ||||||||||| ||| ||||||| ||||||||||| || ||||||||    
T  22712275 cggtgtcccgagaagtcatttggttcagagtatctctcttcaaactcgagaaacttggttcgagacctggtacccagag 22712197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 12521997 - 12521940
Alignment:
Q  73 ccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgaga 130  Q
    ||||||||| | ||| |||||| ||||||| ||||| |||||||||||||||||||||    
T  12521997 ccgagaagttatttgattgagaatttctcttttcaatctcaagaaactcggttcgaga 12521940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 144
Target Start/End: Original strand, 21144679 - 21144760
Alignment:
Q  63 agccggtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacccagag 144  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||   ||||||||||||||| ||||| |||||||||    
T  21144679 agcctgtctcccgagaaatcactttgttgagagtttctctcttcaaccgacagaaactcggttcgatacccgacacccagag 21144760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 15030471 - 15030528
Alignment:
Q  73 ccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgaga 130  Q
    ||||||||| | |||||||||||||||||| ||||| |||||||||||||||||||||    
T  15030471 ccgagaagttatttggttgagagtttctcttttcaatctcaagaaactcggttcgaga 15030528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 7471445 - 7471509
Alignment:
Q  57 cttagtagccggtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactc 121  Q
    |||||| ||| ||||||| ||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  7471445 cttagtggcctgtctcccaagaggtcacttggttgagagtttctttcttcaacctcgagaaactc 7471509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 30316584 - 30316527
Alignment:
Q  73 ccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgaga 130  Q
    ||||||| ||| |||||||||||||||||| ||||| |||||||||||||||| ||||    
T  30316584 ccgagaaatcatttggttgagagtttctcttttcaatctcaagaaactcggtttgaga 30316527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 132
Target Start/End: Complemental strand, 15925942 - 15925888
Alignment:
Q  78 aagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacc 132  Q
    |||||| |||||||||||   |||||||||||||| |||||||||||||||||||    
T  15925942 aagtcatttggttgagagaaactctcttcaacctcgagaaactcggttcgagacc 15925888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 40773482 - 40773404
Alignment:
Q  68 gtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacccagagaa 146  Q
    ||||||||||||||||| ||||||||||   |||||||| ||||| || |||| |||||||||||||||||| ||||||    
T  40773482 gtctcccgagaagtcacgtggttgagagaaactctcttcgacctcgaggaacttggttcgagacccggcaccgagagaa 40773404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 143
Target Start/End: Original strand, 31311983 - 31312047
Alignment:
Q  79 agtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacccaga 143  Q
    |||||| ||||||||||||||||||||||||||| ||| |||||||| |||||||| ||| ||||    
T  31311983 agtcacatggttgagagtttctctcttcaacctcgagagactcggtttgagacccgacacacaga 31312047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Original strand, 786234 - 786285
Alignment:
Q  83 acttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccg 134  Q
    ||||| ||||||||||| |||||||||||  |||||||||||| ||||||||    
T  786234 acttgtttgagagtttccctcttcaaccttgagaaactcggtttgagacccg 786285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 26609799 - 26609856
Alignment:
Q  68 gtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggtt 125  Q
    |||||||||||||||||| |||||||||||||||||||||| ||  ||||||||||||    
T  26609799 gtctcccgagaagtcactaggttgagagtttctctcttcaatcttgagaaactcggtt 26609856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 47190195 - 47190254
Alignment:
Q  80 gtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacc 139  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||| |  |||||||||    
T  47190195 gtcatttggttgagagtttctctcttcaacctcgagaaactcggttcaaatcccggcacc 47190254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 39493353 - 39493283
Alignment:
Q  69 tctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacc 139  Q
    ||||||||||| |||||||||||||| ||| |||||||| | || |||||||| ||| |||||||||||||    
T  39493353 tctcccgagaattcacttggttgagattttttctcttcagcttcgagaaactcagtttgagacccggcacc 39493283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 75 - 129
Target Start/End: Original strand, 8167458 - 8167512
Alignment:
Q  75 gagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgag 129  Q
    |||| |||||||||||||||| |||||||||||||||| ||| || |||||||||    
T  8167458 gagaggtcacttggttgagagattctctcttcaacctcgagatacacggttcgag 8167512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 134
Target Start/End: Original strand, 23431718 - 23431784
Alignment:
Q  68 gtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccg 134  Q
    |||| ||| |||||||||| ||||| |||||||||||||||| || |||||||||||| ||||||||    
T  23431718 gtcttccgggaagtcacttagttgaaagtttctctcttcaacttctagaaactcggtttgagacccg 23431784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 566990 - 567032
Alignment:
Q  88 gttgagagtttctctcttcaacctcaagaaactcggttcgagac 131  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  566990 gttgagagtt-ctctcttcaacctcaagaaactcggttcgagac 567032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 4173908 - 4173851
Alignment:
Q  76 agaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagaccc 133  Q
    |||||||| |||||||| | |||||||||||||| |||| |||||||||| |||||||    
T  4173908 agaagtcatttggttgataatttctctcttcaacttcaaaaaactcggtttgagaccc 4173851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 34678487 - 34678416
Alignment:
Q  68 gtctcccgagaagtcacttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccggcacc 139  Q
    ||||||||| || |||||| |||||||||||||||||||||| |  || |||| |||| |||||||| ||||    
T  34678487 gtctcccgaaaaatcacttagttgagagtttctctcttcaactttgaggaacttggttggagacccgacacc 34678416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 38753490 - 38753439
Alignment:
Q  83 acttggttgagagtttctctcttcaacctcaagaaactcggttcgagacccg 134  Q
    |||||||||||||| ||||||||||||||  ||| |||||||| ||||||||    
T  38753490 acttggttgagagtatctctcttcaaccttgagatactcggttagagacccg 38753439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 47975 - 48017
Alignment:
Q  69 tctcccgagaagtcacttggttgagagtttctctcttcaacct 111  Q
    |||||| ||||||||||||||||||||||| ||||||| ||||    
T  47975 tctcccaagaagtcacttggttgagagtttttctcttcgacct 48017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University