View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17563_low_22 (Length: 237)
Name: NF17563_low_22
Description: NF17563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17563_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 9594544 - 9594700
Alignment:
| Q |
1 |
aagcaataaagttgaactcaagttcaagtgtgtgnnnnnnnnngtttctaagaagttaatttcaacc-tttgttaactaatgcatctaattagttctatt |
99 |
Q |
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| T |
9594544 |
aagcaataaagttgaactcaagttcaagtgtgtgttttta---gtttctaagaagttaatttcaaccatttgttaactaatgcatctaattagttctatt |
9594640 |
T |
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| Q |
100 |
tagtctgtctaattgatcaattaaataaaattgtgaagtcatatcaattcaaaaattaga |
159 |
Q |
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| T |
9594641 |
tagtctgtctaattgatcaattaaatgcaattgtgaagtcatatcaattcaaaaattaga |
9594700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 179 - 221
Target Start/End: Original strand, 9594733 - 9594775
Alignment:
| Q |
179 |
tgacctcaagtttgtcttattaagcaatgtaactagtactgtg |
221 |
Q |
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| T |
9594733 |
tgacctgaagtttgtcttatcaagcaatgtaactagtactgtg |
9594775 |
T |
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