View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17563_low_23 (Length: 232)
Name: NF17563_low_23
Description: NF17563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17563_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 8167465 - 8167684
Alignment:
| Q |
1 |
cggtgttagggttagggtaaccacaaacgtagagtttttcgtttggtgaagtgatgatcattgcagtttttgcattgcaaagaatagatagttctgtaac |
100 |
Q |
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| T |
8167465 |
cggtgttagggttagggtaaccacaaacgtagagttttccgtttggtgaagtgatgatcattgcagtttttgcattgcataggatagatagttctgtaac |
8167564 |
T |
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| Q |
101 |
tttcttgaagagccctagtttgcgttttgagaaggaatcgcggggcttgtttgattgttctgctttcttgattttaatggt---tctcttacgtttgttg |
197 |
Q |
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| T |
8167565 |
tttgttgaagagccctagtttgcgttttgagaaggtatcgaggggcttgtttgattgttctgctttcttgattttaatggttgatctcttacgtttgttg |
8167664 |
T |
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| Q |
198 |
ttgctttttgttgatgtgtt |
217 |
Q |
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| T |
8167665 |
ttgctttttgttgatgtgtt |
8167684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 209
Target Start/End: Original strand, 8999198 - 8999337
Alignment:
| Q |
70 |
ttgcattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaaggaatcgcggggcttgtttgattgttctgctttctt |
169 |
Q |
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| T |
8999198 |
ttgcattgcataaaatgaatagttatgtgactttgttgaagagtcctaatttgcgttttgagaaggtatcatccagcttgttagattcttctactttctt |
8999297 |
T |
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| Q |
170 |
gattttaatggttctcttacgtttgttgttgctttttgtt |
209 |
Q |
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| T |
8999298 |
aatttcattgattctcttaggtgtgtcgttgtgttttgtt |
8999337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 36 - 217
Target Start/End: Original strand, 50707567 - 50707748
Alignment:
| Q |
36 |
ttttcgtttggtgaagtgatgatcattgcagtttttgcattgcaaagaatagatagttctgtaactttcttgaagagccctagtttgcgttttgagaagg |
135 |
Q |
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| T |
50707567 |
tttttgtttggtgaagtgatgatcagtgcggtttttgcattgcatagaatggataattctgttactttgttgaagagtcctagtttgcgctttgaaaagg |
50707666 |
T |
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| Q |
136 |
aatcgcggggcttgtttgattgttctgctttcttgattttaatggttctcttacgtttgttgttgctttttgttgatgtgtt |
217 |
Q |
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| T |
50707667 |
tatcacgccgcttgttcgatggctttgctttcttgatttcaatggttttcttccgtgagttgcttcgttttgttgacgtgtt |
50707748 |
T |
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