View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17563_low_24 (Length: 229)
Name: NF17563_low_24
Description: NF17563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17563_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10336051 - 10336273
Alignment:
| Q |
1 |
ctcgagatcattcccaattttcacaagctcaagattccgatcaaaccgaaaaacatgaacacgactaccagaacttccagcatcaaaaacaacagcaaac |
100 |
Q |
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| T |
10336051 |
ctcgagatcattcccaattttcacaagctcaagattccgatcaaaccgaaaaacatgaacacgactaccagaacttccagcatcaaaaacaacagcaaac |
10336150 |
T |
|
| Q |
101 |
gaatcagaaattttccgatcaggagaaatcttccgatgcgtgagagcgtaatcttcgatggattcatttgaagaagtggaaggcatgatgtagagtatga |
200 |
Q |
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| T |
10336151 |
gaatcagaaattttccgatcaggagaaatcttccgatgcgtgagagcataatcttcgatggactcgttcgaagaagtggaaggcatgatatagagtatga |
10336250 |
T |
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| Q |
201 |
gtgtgacgaggagtagaggaagt |
223 |
Q |
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| T |
10336251 |
gtgtgacgaggagtagaggaagt |
10336273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 32897518 - 32897455
Alignment:
| Q |
34 |
attccgatcaaaccgaaaaacatgaacacgactaccagaacttccagcatcaaaaacaacagca |
97 |
Q |
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|||| ||||||| |||||||||||||||| |||||||| || ||||||||||||| ||||||| |
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| T |
32897518 |
attctgatcaaaatgaaaaacatgaacacggctaccagagctaccagcatcaaaaataacagca |
32897455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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