View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17563_low_3 (Length: 546)
Name: NF17563_low_3
Description: NF17563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17563_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 18 - 536
Target Start/End: Complemental strand, 41638191 - 41637664
Alignment:
| Q |
18 |
ataagcacttatatgtacatttatagtttagttgtttacccaaatagggtctaagtataatcaagattaactctttctcaatgtattctaagtgatctac |
117 |
Q |
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| T |
41638191 |
ataagcacttatatgtacatttatagtttagttgtttacccaaatagggtctaagtataatcaagattaactctttctcaatgtattctaagtgatctac |
41638092 |
T |
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| Q |
118 |
aaaacatgtaatgataagatagtgagaaatgnnnnnnn---------ctgaaacagtaactagacctctgaccaccagaacggccaccaaaaacaaacat |
208 |
Q |
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| T |
41638091 |
aaaacatgtaatgataagatagtgagaaataaaaaaaataaaaaaaactgaaacagtaactagacctctgaccaccagaacggccaccaaaaacaaacat |
41637992 |
T |
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| Q |
209 |
atgacaatcaatagcaacagcaacatgaaatgctcgtggagtgggacccacatgtccatctgaatcacttccagtacactccggttgataccatagctta |
308 |
Q |
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| T |
41637991 |
atgacaatcaatagcaacagcaacatgaaatgctcgtggagtgggacccacatgtccatctgaatcacttccagtacactccggttgataccatagctta |
41637892 |
T |
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| Q |
309 |
gcctctgaaaatttcaacattacaaaacgaatcaaattccaaattttgacaacaacccacaaaagaagagagaaaagggtcactaaccaatatcatagac |
408 |
Q |
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| T |
41637891 |
gcctctgaaaatttcaacattacaaaacgaatcaaattccaaattttgacaacaacccacaaaagaagagagaaaagggtcactaaccaatatcatagac |
41637792 |
T |
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| Q |
409 |
aagaatatcagtgagaaattttttgtcgacaagaccaccgaagatgacaaccttggattttccaatattaacagcggaatgaccactacgaggttgagga |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41637791 |
aagaatatcagtgagaaattttttgtcgacaagaccaccgaagacgacaaccttggattttccaatattaacagcggaatgaccactacgaggttgagga |
41637692 |
T |
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| Q |
509 |
ggtgttcctgcgtaatcagatgatgatg |
536 |
Q |
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| T |
41637691 |
ggtgttcctgcgtaatcagatgatgatg |
41637664 |
T |
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