View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17563_low_4 (Length: 521)

Name: NF17563_low_4
Description: NF17563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17563_low_4
NF17563_low_4
[»] chr4 (1 HSPs)
chr4 (18-516)||(54423585-54424092)
[»] chr1 (6 HSPs)
chr1 (303-516)||(20127319-20127532)
chr1 (29-309)||(20120775-20121056)
chr1 (292-462)||(27645594-27645764)
chr1 (361-437)||(12461045-12461121)
chr1 (310-374)||(13190645-13190709)
chr1 (262-462)||(44137419-44137619)
[»] chr8 (2 HSPs)
chr8 (298-437)||(9182994-9183133)
chr8 (298-437)||(11625140-11625279)
[»] chr6 (3 HSPs)
chr6 (298-437)||(10161217-10161356)
chr6 (361-437)||(16860983-16861059)
chr6 (304-418)||(21740989-21741103)
[»] scaffold0703 (1 HSPs)
scaffold0703 (361-437)||(1937-2013)
[»] scaffold0010 (1 HSPs)
scaffold0010 (298-425)||(238965-239092)


Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Complemental strand, 54424092 - 54423585
Alignment:
Q  18 aatcacctgggccagacagccttaacccggctttctacc-cagattttgggaagatatcggggatgaaatattctcttctgcctagtcttggttagctt- 115  Q
    ||||||||||||||||| |||||||||||  |||||||| |||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||     
T  54424092 aatcacctgggccagacggccttaacccgattttctaccacagattttggaaagatatcggtgatgaaatattctcttctgcctcgtcttggttagcttt 54423993  T
Q  116 -------cgagttatctacccc-agatttaaatgctacaaacatagtgcttgcaccaaagggtgataatccg-aatccatgcgggaccttcgacctattt 206  Q
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  54423992 gagacttcgagttatctacccccagatttaaatgctacaaacatagtgcttgcaccaaagggtgataatctggaatccatgcgggaccttcgacctattt 54423893  T
Q  207 ctctctgcaatgtgttatacaagatcgcgtttctaaggtcctggtcaatcgtcttcgtccacttattaacaaatgaattttccaagaacaggcagccttt 306  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  54423892 ctctctgcaatgtgttatacaagatcg--tttctaaggtcctggtcaatcgtcttcgtccacttattaacaaatggatttcccaagaacaggcagccttt 54423795  T
Q  307 gtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctca 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  54423794 gtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaagaaaaaataggtgaggtggctctca 54423695  T
Q  407 aacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctattttatttaaaatggggttcagttcacagtggacttcctggatgat 506  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54423694 aacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctattttatttaaaatggggttcagttcacagtggacttcctggatgat 54423595  T
Q  507 gatgtccatc 516  Q
    ||||| ||||    
T  54423594 gatgtgcatc 54423585  T

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Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 303 - 516
Target Start/End: Original strand, 20127319 - 20127532
Alignment:
Q  303 ctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggct 402  Q
    ||||||||||||||||||||||||||||||||||||||| || || ||||| || |||||||||||||||||||||||||| |||||||| ||||||||     
T  20127319 ctttgtgcattctcgctcaatcatggataatgcgctaaccgcttttgaagtcctccatcatatgcgctgcaaaacaaaagggaaaataggcgaggtggca 20127418  T
Q  403 ctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctattttatttaaaatggggttcagttcacagtggacttcctgga 502  Q
    || |||||||| |||||||||||||| |||||||||| |||| | ||||||||| | ||| |  |||||||||| ||||||||||| ||||| |||||||    
T  20127419 ctaaaacttgatatatccaaggcatttgatagtgtaagttggccttacctcaaatccattctccttaaaatgggtttcagttcacaatggacctcctgga 20127518  T
Q  503 tgatgatgtccatc 516  Q
    ||||||||| ||||    
T  20127519 tgatgatgtgcatc 20127532  T

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Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 29 - 309
Target Start/End: Original strand, 20120775 - 20121056
Alignment:
Q  29 ccagacagccttaacccggctttctaccc-agattttgggaagatatcggggatgaaatattctcttctgcctagtcttggttagcttcgagttatctac 127  Q
    |||||| |||||||||||||||||||||  || |||||||| || || ||||| ||||| ||||||| ||||| ||||||||| ||||| | || ||| |    
T  20120775 ccagacggccttaacccggctttctaccataggttttgggaggacattggggacgaaattttctcttttgccttgtcttggttggcttcaacttctctgc 20120874  T
Q  128 ccc-agatttaaatgctacaaacatagtgcttgcaccaaagggtgataatccg-aatccatgcgggaccttcgacctatttctctctgcaatgtgttata 225  Q
    ||| ||| ||||||| |||||||||||| || || |||||||| || |||||| |||||||||| |||||||| |||||||||||||| |||||  | ||    
T  20120875 ccccagaattaaatgttacaaacatagttctcgctccaaagggagacaatccggaatccatgcgagaccttcggcctatttctctctgtaatgtactgta 20120974  T
Q  226 caagatcgcgtttctaaggtcctggtcaatcgtcttcgtccacttattaacaaatgaattttccaagaacaggcagcctttgtg 309  Q
    |||||| |  | ||||||||||| | ||||||||| | |||| | || |||||||| |||| ||||||||| ||||||||||||    
T  20120975 caagattg--tctctaaggtccttgccaatcgtctccatccattaatcaacaaatggatttcccaagaacaagcagcctttgtg 20121056  T

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Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 292 - 462
Target Start/End: Complemental strand, 27645764 - 27645594
Alignment:
Q  292 gaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaatag 391  Q
    ||||||||||| || || || || ||||| ||||||||||||||  |||| || || ||| |  | |||||||||||||||||||| ||||| ||||| |    
T  27645764 gaacaggcagcattcgttcactcccgctctatcatggataatgctttaacggcctttgaaatcttacatcatatgcgctgcaaaaccaaaggtaaaattg 27645665  T
Q  392 gtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctatt 462  Q
    ||||||||||||| |||||||| || || ||||| || |||||||| |  |||| |||||| |||||||||    
T  27645664 gtgaggtggctctgaaacttgatatctctaaggcttttgatagtgttagctggttgtaccttaaagctatt 27645594  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 12461121 - 12461045
Alignment:
Q  361 catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt 437  Q
    |||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || |||||    
T  12461121 catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt 12461045  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 374
Target Start/End: Complemental strand, 13190709 - 13190645
Alignment:
Q  310 cattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaa 374  Q
    |||||||| || ||||||||||||||  |||||||||| ||| ||||||| |||||||| |||||    
T  13190709 cattctcgttccatcatggataatgctttaacagcatttgaaattcttcaccatatgcggtgcaa 13190645  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 462
Target Start/End: Original strand, 44137419 - 44137619
Alignment:
Q  262 cgtccacttattaacaaatgaattttccaagaacaggcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatc 361  Q
    ||||| || ||||||||||| || |  | ||||||| | |||||||| || ||||| || ||||||||||| ||  ||||| |||| ||   ||| || |    
T  44137419 cgtcctctcattaacaaatggatctcaccagaacagtctgcctttgttcactctcgttctatcatggataacgctttaacaacatttgagactctccacc 44137518  T
Q  362 atatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgtaaattggtcgtacctcaaagctat 461  Q
    ||||||| |||||||  ||||||||||| ||||| || ||| | ||  | ||||| || ||||| || || ||||||| |||||| |||||  |||||||    
T  44137519 atatgcgttgcaaaaggaaaggaaaaattggtgaagttgctttgaagttagacatctctaaggcttttgacagtgtaagttggtcctaccttgaagctat 44137618  T
Q  462 t 462  Q
    |    
T  44137619 t 44137619  T

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Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 298 - 437
Target Start/End: Complemental strand, 9183133 - 9182994
Alignment:
Q  298 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 397  Q
    ||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| |||| ||| ||||||||||||| |  |||||||||  |||||| |    
T  9183133 gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg 9183034  T
Q  398 tggctctcaaacttgacatatccaaggcattcgatagtgt 437  Q
    | ||||| ||||||||||| || ||||| || ||||||||    
T  9183033 tagctctaaaacttgacatttcgaaggcttttgatagtgt 9182994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 298 - 437
Target Start/End: Original strand, 11625140 - 11625279
Alignment:
Q  298 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 397  Q
    ||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| | || ||| ||||||||||||| |  |||||||||| |||||| |    
T  11625140 gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaatactacattatatgcgctgcaagaataaaggaaaaaaaggtgatg 11625239  T
Q  398 tggctctcaaacttgacatatccaaggcattcgatagtgt 437  Q
    | ||||| ||||||||||| || ||||| || ||||||||    
T  11625240 tagctctaaaacttgacatttcgaaggcttttgatagtgt 11625279  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 298 - 437
Target Start/End: Complemental strand, 10161356 - 10161217
Alignment:
Q  298 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 397  Q
    ||||| ||||||| |||||| || || |||||||| ||||| ||||| || ||| |||| ||| ||||||||||||| |  |||||||||  |||||| |    
T  10161356 gcagcgtttgtgccttctcgttcgataatggataacgcgctcacagcctttgaaattctacattatatgcgctgcaagaataaaggaaaacaaggtgatg 10161257  T
Q  398 tggctctcaaacttgacatatccaaggcattcgatagtgt 437  Q
    | ||||| ||||||||||| || ||||| || ||||||||    
T  10161256 tagctctaaaacttgacatttcgaaggcttttgatagtgt 10161217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 437
Target Start/End: Original strand, 16860983 - 16861059
Alignment:
Q  361 catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt 437  Q
    |||||||| || ||| |||||||||||| ||||||||| ||| | ||||||||||||||||| ||||| || |||||    
T  16860983 catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgacatatccaaagcatttgacagtgt 16861059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 304 - 418
Target Start/End: Complemental strand, 21741103 - 21740989
Alignment:
Q  304 tttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgaggtggctc 403  Q
    ||||| ||||||| ||| || ||||| ||||| || |  |||| |||| |||||||||||||||| || ||| | ||||| || | |||||||||||||     
T  21741103 tttgtccattctctctccattatggacaatgctctgatggcatacgaaattcttcatcatatgcgttgtaaatcgaaagggaagaaaggtgaggtggctt 21741004  T
Q  404 tcaaacttgacatat 418  Q
    | |||||||| ||||    
T  21741003 tgaaacttgatatat 21740989  T

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Target: scaffold0703 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 437
Target Start/End: Complemental strand, 2013 - 1937
Alignment:
Q  361 catatgcgctgcaaaacaaaaggaaaaataggtgaggtggctctcaaacttgacatatccaaggcattcgatagtgt 437  Q
    |||||||| || ||| |||||||||||| ||||||||| ||| | |||||||| |||||||| ||||| || |||||    
T  2013 catatgcgttgtaaatcaaaaggaaaaaaaggtgaggttgctttgaaacttgatatatccaaagcatttgacagtgt 1937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 425
Target Start/End: Complemental strand, 239092 - 238965
Alignment:
Q  298 gcagcctttgtgcattctcgctcaatcatggataatgcgctaacagcattcgaagttcttcatcatatgcgctgcaaaacaaaaggaaaaataggtgagg 397  Q
    ||||||||||| |  ||| | || |||||||||||||| ||| |||| || ||| |||||||   |||||| ||||| | |||||| ||||| || ||||    
T  239092 gcagcctttgttccatctagatccatcatggataatgctctatcagcctttgaaattcttcactttatgcgatgcaagaaaaaaggtaaaattggcgagg 238993  T
Q  398 tggctctcaaacttgacatatccaaggc 425  Q
    ||||| | || ||||| |||||||||||    
T  238992 tggctttaaagcttgatatatccaaggc 238965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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