View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17563_low_5 (Length: 469)
Name: NF17563_low_5
Description: NF17563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17563_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 9 - 451
Target Start/End: Complemental strand, 25496493 - 25496051
Alignment:
| Q |
9 |
agcacagagatgcagcacagatggcagcaactgaggccatgcaagaggctgctgctgctgacagtttgctacaatgtcttaggtattgactttagatcag |
108 |
Q |
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| T |
25496493 |
agcacagagatgcagcacagatggcagcaactgaggccatgcaagaggctgctgctgctgacagtttgctacaatgtcttaggtattgactttagatcag |
25496394 |
T |
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| Q |
109 |
attttcagatctttgtttcttaatccggttgagattttggactgatcatgtcaagaaatttcaatttcaatttgaaaccaagatatgcattattaataaa |
208 |
Q |
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| T |
25496393 |
attttcagatctttgtttcttaatccggttgacattttggactgatcatgtcaagaaatttcaatttcaatttgaaaccaagatatgcattattaataaa |
25496294 |
T |
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| Q |
209 |
ggtttttcagtaatttcgttatcaagttgaaacaaatcaccttttgaggatatgcaaaaaataatatgatatatactgataccaaagctataatgttgat |
308 |
Q |
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| T |
25496293 |
ggtttttcagtaatttcgttatcaagttgaaacaaatcaccttttgaggatatgcaaaaaataatatgatatatactgataccaaagctataatgttgat |
25496194 |
T |
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| Q |
309 |
acttatcattgactaaacatgtggtttgatgagttgaaaggacggctttaagttgtttatggtgtacaagactgctgaaaatattgtaatctaatcaatg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25496193 |
acttatcattgactaaacatgtggtttgatgagttgaaaggacggctttaagttgtttatggtgtacaagactgctgaaaatattgtaatctaatcaatg |
25496094 |
T |
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| Q |
409 |
taggtaagatagtgaaacatgtagtgaaattcaggtttaacct |
451 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25496093 |
taggtaagatagtgaaacatatagtgaaattcaggtttaacct |
25496051 |
T |
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