View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17563_low_8 (Length: 403)
Name: NF17563_low_8
Description: NF17563
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17563_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 1531392 - 1531017
Alignment:
| Q |
11 |
cacagaactcatagcaaagggatatttctccactttgtcaccaaagaaatttgttgtctccccagcaacaaaaaggatgagtgcatagaagagcataaat |
110 |
Q |
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| T |
1531392 |
cacagaactcatagcaaagggatatttctccactttgtcaccaaagaaatttgttgtctccccagcaacaaaaaggatgagtgcatagaagagcataaat |
1531293 |
T |
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| Q |
111 |
ataatgccagtgataagtttaaaccttttgagaccactcacacaagttggaggttcatgcttaaatatagccattggagagagagcaataatccaaatga |
210 |
Q |
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| T |
1531292 |
ataatgccagtgataagtttaaaccttttgagaccactcacacaagttggaggttcatgcttaaatatagccattggagagagagcaataatccaaatga |
1531193 |
T |
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| Q |
211 |
tagaaacaattaaagcagtaataggtgatatgataactatcaataaaacacatatacatgcaagcataaaaatttggaaatattcccctagatcaagagg |
310 |
Q |
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| T |
1531192 |
tagaaacaattaaagcagtaataggtgatatgataactatcaataaaacacatatacatgcaagcataaaaatttggaaatattcccctagatcaagagg |
1531093 |
T |
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| Q |
311 |
tggagattctaagatg-ttagtgagaataatgatgagaaaagtgataactgtgaaaactaacaacaatctcataac |
385 |
Q |
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| T |
1531092 |
tggagattctaagatgtttagtgagaataatgatgagaaaagtgataactgtgaaaactaacaacaatctcataac |
1531017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 337 - 382
Target Start/End: Complemental strand, 1526654 - 1526609
Alignment:
| Q |
337 |
taatgatgagaaaagtgataactgtgaaaactaacaacaatctcat |
382 |
Q |
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| T |
1526654 |
taatgatgagaaaagtgataactgtgaaaactaacaacaatctcat |
1526609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 336 - 382
Target Start/End: Original strand, 23084370 - 23084416
Alignment:
| Q |
336 |
ataatgatgagaaaagtgataactgtgaaaactaacaacaatctcat |
382 |
Q |
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| T |
23084370 |
ataatgatgagaaaagtgataactgtgaaaactaataacaatctcat |
23084416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 320 - 377
Target Start/End: Complemental strand, 1529835 - 1529778
Alignment:
| Q |
320 |
taagatgttagtgagaataatgatgagaaaagtgataactgtgaaaactaacaacaat |
377 |
Q |
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||||||| |||||||||||| |||||||||||| ||||| |||||||||||||||||| |
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| T |
1529835 |
taagatggtagtgagaataacgatgagaaaagtaataacagtgaaaactaacaacaat |
1529778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 1530060 - 1530015
Alignment:
| Q |
174 |
aatatagccattggagagagagcaataatccaaatgatagaaacaa |
219 |
Q |
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| T |
1530060 |
aatatagccattgcggagagagcaataacccaaatgataaaaacaa |
1530015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 385
Target Start/End: Complemental strand, 43623859 - 43623810
Alignment:
| Q |
336 |
ataatgatgagaaaagtgataactgtgaaaactaacaacaatctcataac |
385 |
Q |
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|||| |||||||||| ||| | ||||||||||||||||||||||||||| |
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| T |
43623859 |
ataacgatgagaaaattgaaagatgtgaaaactaacaacaatctcataac |
43623810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 336 - 385
Target Start/End: Original strand, 43995147 - 43995196
Alignment:
| Q |
336 |
ataatgatgagaaaagtgataactgtgaaaactaacaacaatctcataac |
385 |
Q |
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|||| |||||||||| ||| | ||||||||||||||||||||||||||| |
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| T |
43995147 |
ataacgatgagaaaattgaaagatgtgaaaactaacaacaatctcataac |
43995196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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