View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17564_high_5 (Length: 364)
Name: NF17564_high_5
Description: NF17564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17564_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 4078728 - 4078380
Alignment:
| Q |
1 |
taacaaacaattcaaattcatgctaacatcctaacaaagtcataaatatataccttgaaatttgcaaa-tcatcacaatcattccctgctattgattgat |
99 |
Q |
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| T |
4078728 |
taacaaacaattcaaattcatgctaacatcctaacaaagtcataaatatataacttgaaatttgcaaaatcatcacaatcattccctgctattgatagat |
4078629 |
T |
|
| Q |
100 |
catatccctagccatttaaactttatgcatcaacatcaggagtgattttgctttataatctgtaactgctaactttgcaacattcactagatgaacaggt |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078628 |
cacatccctagccatttaaactttatgcatcaacatcaggagtgattttgctttataatctgtaactgctaactttgcaacattcactagatgaacaggt |
4078529 |
T |
|
| Q |
200 |
tcctcgcctagcgaacaaccacaaaatgttcattgccaaagcaaaattagcaaaagatagagtttttaaaaaattagcagattcgctaggcgaataggtc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078528 |
tcctcgcctagcgaacaaccacaaaatgttcattgccaaagcaaaattagcaaaagatagagtttttaaaaaattagcagattcgctaggcgaataggtc |
4078429 |
T |
|
| Q |
300 |
attgcctagcaaatttatcagagaaaacatagtttttcaacttcaattt |
348 |
Q |
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| T |
4078428 |
attgcctagcaaatttaacagagaaaacatagtttttcaacttcaattt |
4078380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 348
Target Start/End: Complemental strand, 4101492 - 4101133
Alignment:
| Q |
1 |
taacaaacaattcaaattcatgctaacatcctaacaaagtcataaatatataccttgaaatttgcaaatc------------atcacaatcattccctgc |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |
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| T |
4101492 |
taacaaacaattcaaattcatgctaacatcctaacaaagtcataaacatataccttgacatttgcaaatcctcatacaaatcatcacaatcattccctgc |
4101393 |
T |
|
| Q |
89 |
tattgattgatcatatccctagccatttaaactttatgcatcaacatcaggagtgattttgctttataatctgtaactgctaactttgcaacattcacta |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4101392 |
tattgattgatcatatccctagccatttaaactttatgcatcaacatcaggagtgattttgctttataatctgtaactgctaactttgcaacattcacta |
4101293 |
T |
|
| Q |
189 |
gatgaacaggttcctcgcctagcgaacaaccacaaaatgttcattgccaaagcaaaattagcaaaagatagagtttttaaaaaattagcagattcgctag |
288 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4101292 |
gatgaacagattcctcgcctagcgaacaaccacaaaatgttcattgccaaagcaaaattaacaaaagatagagtttttaaaaaattagcagattcgctag |
4101193 |
T |
|
| Q |
289 |
gcgaataggtcattgcctagcaaatttatcagagaaaacatagtttttcaacttcaattt |
348 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
4101192 |
gcgaataggtcattgcctagcaaatttaacagagaaaacatagtttttcaacttcaattt |
4101133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 19569052 - 19569000
Alignment:
| Q |
263 |
ttttaaaaaattagcagattcgctaggcgaataggtcattgcctagcaaattt |
315 |
Q |
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|||| ||||||||||| ||||||||| |||||||||| | |||||| |||||| |
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| T |
19569052 |
ttttcaaaaattagcaaattcgctagtcgaataggtcctcgcctagaaaattt |
19569000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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