View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17564_low_3 (Length: 453)

Name: NF17564_low_3
Description: NF17564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17564_low_3
NF17564_low_3
[»] chr2 (12 HSPs)
chr2 (36-434)||(1436404-1436802)
chr2 (36-429)||(1430248-1430636)
chr2 (58-434)||(1441962-1442328)
chr2 (99-429)||(1449374-1449699)
chr2 (36-194)||(1456803-1456961)
chr2 (175-396)||(1456561-1456774)
chr2 (196-288)||(1449711-1449800)
chr2 (300-358)||(21017333-21017391)
chr2 (374-434)||(21017386-21017449)
chr2 (1-39)||(1436816-1436854)
chr2 (1-33)||(1430656-1430688)
chr2 (5-39)||(1443467-1443501)
[»] chr1 (1 HSPs)
chr1 (280-397)||(43826026-43826143)


Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 36 - 434
Target Start/End: Complemental strand, 1436802 - 1436404
Alignment:
Q  36 aagagatggtgaaaagcatatccacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatatgatagaatcttc 135  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1436802 aagaaatggtgaaaagcatatccacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatatgatagaatcttc 1436703  T
Q  136 aaacggatcgtctaggaccttagagttcatctggctcgatatgtgaagttgaatctactactatatccgatttgcattagaagggtgatgcatgcgattg 235  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1436702 aaacggatcgtctaggaccttagagttcatctggctcgatgtgtgaagttgaatctactactatatccgatttgcattagaagggtgatgcatgcggttg 1436603  T
Q  236 ttgctaaaatcttgtcagtacttctcttctttctgccattgcatccatttttcggccaaaccatcaccttctagcattctcaccacctcagacatcttag 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1436602 ttgctaaaatcttgtcagtacttctcttctttctgccattgcatccatttttcggccaaaccatcgccttctagcattctcaccacctcagacatcttag 1436503  T
Q  336 gtctttccataggggacccttgtgtgcatagtaaagcaacttggattaactgctctacctcatcatcatcataatttccctttaactctgcatctacca 434  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1436502 gtctttccataggggacccttgtgtgcatagtaaagcaacttggattaactgctctacctcatcatcatcataatttccctttaactctgcatctacca 1436404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 36 - 429
Target Start/End: Complemental strand, 1430636 - 1430248
Alignment:
Q  36 aagagatggtgaaaagcatatccacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatatgatagaatcttc 135  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1430636 aagagatggtgaaaagcatatgcacaaatcatgaaagtttatctctttcaggcagaggaaaaaggattgtgtattcactagtggatatgatagaatcttc 1430537  T
Q  136 aaacggatcgtctaggaccttagagttcatctggctcgatatgtgaagttgaatctactactatatccgatttgcattagaagggtgatgcatgcgattg 235  Q
    ||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||  || ||||||||||    ||||||||||| | |||    
T  1430536 aaacggatcatctaggacctgagagttcatctggctggatatgtgaagttgaatctactactat--ccaatttgcattat---ggtgatgcatgtggttg 1430442  T
Q  236 ttgctaaaatcttgtcagtacttctcttctttctgccattgcatccatttttcggccaaaccatcaccttctagcattctcaccacctcagacatcttag 335  Q
    ||| |||||||||||| |||| ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1430441 ttgttaaaatcttgtcggtacgtctcttctttctgccattgctcccatttttcggccaaaccatcaccttctagcattctaaccacctcagacatcttag 1430342  T
Q  336 gtctttccataggggacccttgtgtgcatagtaaagcaacttggattaactgctctacctcatcatcatcataatttccctttaactctgcatc 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  1430341 gtctttccataggggacccttgtgtgcatagtaaagcaacttggattaactgctctacctcatcatcctcataatttccctttagctctgcatc 1430248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 58 - 434
Target Start/End: Complemental strand, 1442328 - 1441962
Alignment:
Q  58 cacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatatgatagaatcttcaaacggatcgtctaggacctta 157  Q
    ||||||||||| | ||||||||| |||||||||||||||   ||||   |||||||| ||  |||||||||||| || ||| ||||| |||||||||| |    
T  1442328 cacaaatcatgta-gtttatctcgttcaggcagaggaag---gattacatattcacttgtccatatgatagaatgttaaaa-ggatcatctaggacctga 1442234  T
Q  158 gagttcatctggctcgatatgtgaagttgaatctactactatatccgatttgcattagaagggtgatgcatgcgattgttgctaaaatcttgtcagtact 257  Q
    ||||||||||||||  ||||||||||||||||||||||||||  || |||||||||||   ||||||||||| | |||||| |||||||||||| ||||     
T  1442233 gagttcatctggctgaatatgtgaagttgaatctactactat--ccaatttgcattag---ggtgatgcatgtggttgttgttaaaatcttgtcggtacg 1442139  T
Q  258 tctcttctttctgccattgcatccatttttcggccaaaccatcaccttctagcattctcaccacctcagacatcttaggtctttccataggggacccttg 357  Q
    |||||||||| |||||||||  ||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  1442138 tctcttctttttgccattgctcccatttttctgccaaaccatcgccttctagcattctaaccacctcagacatcttaggcctttccataggggacccttg 1442039  T
Q  358 tgtgcatagtaaagcaacttggattaactgctctacctcatcatcatcataatttccctttaactctgcatctacca 434  Q
    |||||||| |||||||||||| |||| ||  |||| ||| |||||||| ||||||||||||||||| ||||||||||    
T  1442038 tgtgcatattaaagcaacttgaattagcttttctatctcttcatcatcgtaatttccctttaactccgcatctacca 1441962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 99 - 429
Target Start/End: Complemental strand, 1449699 - 1449374
Alignment:
Q  99 ggattgtgtattcactagtggatatgatagaatcttcaaacggatcgtctaggaccttagagttcatctggctcgatatgtgaagttgaatctactacta 198  Q
    |||||||||||| ||||||| ||||||||||||||||||| ||||| |||||||||  |||||||||||| ||  |||||||||||||| ||||||||||    
T  1449699 ggattgtgtattgactagtgaatatgatagaatcttcaaagggatcatctaggacccgagagttcatctgcctgaatatgtgaagttgagtctactacta 1449600  T
Q  199 tatccgatttgcattagaagggtgatgcatgcgattgttgctaaaatcttgtcagtacttctcttctttctgccattgcatccatttttcggccaaacca 298  Q
    |  || ||||| |||| |   |||||||||| | |||||| |||||||  ||| || | |||| |||||||||||||||  ||||||||||| |||||||    
T  1449599 t--ccaatttgtattaaa---gtgatgcatgtggttgttgttaaaatcccgtcggttcgtctcctctttctgccattgctcccatttttcggacaaacca 1449505  T
Q  299 tcaccttctagcattctcaccacctcagacatcttaggtctttccataggggacccttgtgtgcatagtaaagcaacttggattaactgctctacctcat 398  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||  |||| ||| |    
T  1449504 tcaccttctagcattctaacaacctcagacatcttaggcctttccataggggacccttgtgtgcatagtaaagcaacttggattagcttttctatctctt 1449405  T
Q  399 catcatcataatttccctttaactctgcatc 429  Q
    ||| ||||||||||||||||| |||||||||    
T  1449404 catgatcataatttccctttagctctgcatc 1449374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 36 - 194
Target Start/End: Complemental strand, 1456961 - 1456803
Alignment:
Q  36 aagagatggtgaaaagcatatccacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatatgatagaatcttc 135  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  1456961 aagagatggtgaaaagcatctgcacaaatcatgaaagtttatctctttcaggcagaggaagaaggattgtgtattcactagtggatgtgacagaatcttc 1456862  T
Q  136 aaacggatcgtctaggaccttagagttcatctggctcgatatgtgaagttgaatctact 194  Q
    ||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||    
T  1456861 aaacggatcatctaggacctgatagttcatctggctcgatatgtgaagttgaatctact 1456803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 175 - 396
Target Start/End: Complemental strand, 1456774 - 1456561
Alignment:
Q  175 tatgtgaagttgaatctactactatatccgatttgcattagaagggtgatgcatgcgattgttgctaaaatcttgtcagtacttctcttctttctgccat 274  Q
    |||||||||||||||||||||     ||| ||||||||||    ||||||||||| | || ||| |||||||||||| |||| |||| ||||||||||||    
T  1456774 tatgtgaagttgaatctacta-----tccaatttgcattaa---ggtgatgcatgtggtttttgttaaaatcttgtcggtacgtctcctctttctgccat 1456683  T
Q  275 tgcatccatttttcggccaaaccatcaccttctagcattctcaccacctcagacatcttaggtctttccataggggacccttgtgtgcatagtaaagcaa 374  Q
    |||  ||||||||| ||||||||||| ||||| ||||||||||||||||||||||| || |||||||||||||| ||   |||||||||||||||||| |    
T  1456682 tgctcccatttttcagccaaaccatcgccttcaagcattctcaccacctcagacatttttggtctttccataggtgaaaattgtgtgcatagtaaagcca 1456583  T
Q  375 cttggattaactgctctacctc 396  Q
    |||||||||||| |||||||||    
T  1456582 cttggattaacttctctacctc 1456561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 288
Target Start/End: Complemental strand, 1449800 - 1449711
Alignment:
Q  196 ctatatccgatttgcattagaagggtgatgcatgcgattgttgctaaaatcttgtcagtacttctcttctttctgccattgcatccatttttc 288  Q
    |||||||| |||||||||||   ||||||||||||| |||||| ||||||||||||  | | ||||||||||||||||||||  |||||||||    
T  1449800 ctatatccaatttgcattag---ggtgatgcatgcggttgttgttaaaatcttgtcgatgcatctcttctttctgccattgctcccatttttc 1449711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 300 - 358
Target Start/End: Original strand, 21017333 - 21017391
Alignment:
Q  300 caccttctagcattctcaccacctcagacatcttaggtctttccataggggacccttgt 358  Q
    |||||||||||||||| ||||||||| |||||||||| ||||||||||||||| |||||    
T  21017333 caccttctagcattctaaccacctcacacatcttaggactttccataggggacacttgt 21017391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 21017386 - 21017449
Alignment:
Q  374 acttggattaactgctctacctcat---catcatcataatttccctttaactctgcatctacca 434  Q
    ||||| |||||||||||||||||||   ||||||||||||||||||||||||||||||| ||||    
T  21017386 acttgtattaactgctctacctcatcatcatcatcataatttccctttaactctgcatccacca 21017449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1436854 - 1436816
Alignment:
Q  1 aacgtgaagatacaagataatttcaagaagatcaaaaga 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  1436854 aacgtgaagatacaagataatttcaagaagatcaaaaga 1436816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1430688 - 1430656
Alignment:
Q  1 aacgtgaagatacaagataatttcaagaagatc 33  Q
    |||||||||||||||||||||||||||||||||    
T  1430688 aacgtgaagatacaagataatttcaagaagatc 1430656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 1443501 - 1443467
Alignment:
Q  5 tgaagatacaagataatttcaagaagatcaaaaga 39  Q
    |||| ||||||||||||||||||||||||||||||    
T  1443501 tgaacatacaagataatttcaagaagatcaaaaga 1443467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 397
Target Start/End: Original strand, 43826026 - 43826143
Alignment:
Q  280 ccatttttcggccaaaccatcaccttctagcattctcaccacctcagacatcttaggtctttccataggggacccttgtgtgcatagtaaagcaacttgg 379  Q
    |||| |||| ||||| ||||| ||||| ||||||||||| || || |||||||| || |  |||||||| || ||||| |||||||| |  ||||| |||    
T  43826026 ccatctttctgccaagccatcgccttcaagcattctcactacatctgacatctttggccggtccataggcgaaccttgcgtgcatagcagcgcaacctgg 43826125  T
Q  380 attaactgctctacctca 397  Q
    |||||||| |||||||||    
T  43826126 attaactgttctacctca 43826143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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