View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17564_low_4 (Length: 443)
Name: NF17564_low_4
Description: NF17564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17564_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 36792472 - 36792906
Alignment:
| Q |
18 |
atttaggtcttgtgtgtaagacgtcgcggtgaataaagtgagagtgtttcacataaacgactcgtagcttcgattttcaaataaaaatgtaagacttttt |
117 |
Q |
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| T |
36792472 |
atttaggtcttgtgtgtaagacatcgcggtgaataaagtgagagtgtttcacataaacgactcgtagcttcgattctcatataacaatgtaagacttttt |
36792571 |
T |
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| Q |
118 |
tagtgtaccgaaataatttgtttctctttagtttttccatttgatatttctcaactatttgtctatcatggaccctgtaatattccttnnnnnnnnnnta |
217 |
Q |
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|| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
36792572 |
taatgtaccgaaataatttgtttctctttagttttttcatttgatatttctcaactatttgtctatcatgaaccctgtaatattccttccaaaaaaaaaa |
36792671 |
T |
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| Q |
218 |
tgaaccctgtaatatg------------------gtttccacataaattattccttctgattaaactactatataatttttagactactttatt------ |
293 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36792672 |
tgaaccctgtaatatggtgtgacgcgcattctttgtttccacataaattattccttctgattaaactactatataatttttagactactttattcaaaac |
36792771 |
T |
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| Q |
294 |
nnnnnnnnnnngtagtttttagactatactgtttaattaaaaattataggggtaagtgtatgatgattctgcttcaagcagtagggttgtaagttttata |
393 |
Q |
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||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36792772 |
aaaaaaaagaagtagtttttagactatactatttaattaaaaattataggtgtaagtgtatgatgattctgcttcaagcagtagggttgtaagttttata |
36792871 |
T |
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| Q |
394 |
gccgcccaaacatattaggctctcccaaaggcgat |
428 |
Q |
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| T |
36792872 |
gccgcccaaacatattaggctctcccaaaggcgat |
36792906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 36786263 - 36786303
Alignment:
| Q |
234 |
gtttccacataaattattccttctgattaaactactatata |
274 |
Q |
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||||||||||||||||| |||| |||||||||||||||||| |
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| T |
36786263 |
gtttccacataaattataccttatgattaaactactatata |
36786303 |
T |
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