View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17564_low_6 (Length: 426)
Name: NF17564_low_6
Description: NF17564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17564_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 189 - 409
Target Start/End: Complemental strand, 32983260 - 32983040
Alignment:
| Q |
189 |
aattggaagatattattgatgttgatccaagtaatgagaaccattctacaccgaatcagattacttggtgagtggccaatctaacaccattttccatgca |
288 |
Q |
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| T |
32983260 |
aattggaagatattattgatgttgatccaagcaatgagaaccattctacaccgaatcagattacttggtgagtggccaatctaacaccgttttccatgca |
32983161 |
T |
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| Q |
289 |
tgcacaaattaaaaagattctatagttgtagtagaagattcatggtacaaatcctttatgtttcatagtttttgtctcattttaattcatccacacctat |
388 |
Q |
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| T |
32983160 |
tgcacaaatcaaaaagattctatagttgtagtagaagattcatggtacaaatcctttatgtttcatagtttttgtctcattttaattcatccacacctat |
32983061 |
T |
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| Q |
389 |
gcagggcctaacaagtgtcac |
409 |
Q |
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| T |
32983060 |
gcagggcctaacaagtgtcac |
32983040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 32983414 - 32983339
Alignment:
| Q |
1 |
ttaagatgtacaaatctaatgactcatagccctgaaataaggacatcatattctttgaaattttaattgaactccg |
76 |
Q |
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| T |
32983414 |
ttaagatgtacacatctaatgactcatagccctgaaataaggacatgatattctttgaaattttaattgaactccg |
32983339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 32983292 - 32983254
Alignment:
| Q |
123 |
gttttgtaattagtaacggagataataattttaattgga |
161 |
Q |
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| T |
32983292 |
gttttgtaattagtaacggagataataattttaattgga |
32983254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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