View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17564_low_8 (Length: 309)

Name: NF17564_low_8
Description: NF17564
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17564_low_8
NF17564_low_8
[»] chr8 (1 HSPs)
chr8 (16-309)||(9247061-9247354)


Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 9247061 - 9247354
Alignment:
Q  16 ctgtggaaggaagtaacttgacaaggttagtacaatcgtcttctgtgttgcattgcatcacttgctccggtgtgagagaatcaagtactccagttggaag 115  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9247061 ctgtggaaggaagtaacttgacaaggttagtgcaatcgtcttctgtgttgcattgcatcacttgctccggtgtgagagaatcaagtactccagttggaag 9247160  T
Q  116 ttctctaaaccaagcctgcaagagagtcaaatacttcaaattatacacataaccgaaagactttggaagtgttacgcatgagttctgccaaatgaaattc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9247161 ttctctaaaccaagcctgcaagagagtcaaatacttcaaattatacacataaccgaaagactttggaagtgttacgcatgagttctgccaaatgaaattc 9247260  T
Q  216 aattgattgtaattatgcagagaagttgaattaaacatcttgataaataccttaatcaagccggataaacaatgaacatcgattccatgtggca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9247261 aattgattgtaattatgcagagaagttgaattaaacatcttgataaataccttaatcaagccggataaacaatgaacatcgattccatgtggca 9247354  T

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