View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17565_high_19 (Length: 268)
Name: NF17565_high_19
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17565_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 251
Target Start/End: Complemental strand, 30240240 - 30239999
Alignment:
| Q |
10 |
attattcttttttgcatgaagtggcttattttatcatatagtgttggacttgtttctttttagcattagtactgcgaacaaacgcgtactgaatctctat |
109 |
Q |
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| T |
30240240 |
attattcttttttgcatgaagtggcttatttcatcatatagtgttggacttgtttctttttagcattagtactgcgaacagacgcgtactgaagctctat |
30240141 |
T |
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| Q |
110 |
accccatacgtaccgaattcttcacatatgtgactatggtctcaacatttgcaaatggatcaccaattgggacacctttatttgtgttacaaacattaac |
209 |
Q |
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| T |
30240140 |
accccatacgtaccgaattcttcacatatgtgactatggtctcaacatttgcaaatggatcaccaattgggacaccttcatttgtgttacaaacattaac |
30240041 |
T |
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| Q |
210 |
agttgcattagtgctatttgtgctatcaattatgacatgaat |
251 |
Q |
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| T |
30240040 |
agttgcattagtgttatttgtgctatcaattatgacatgaat |
30239999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 136
Target Start/End: Original strand, 45982969 - 45982998
Alignment:
| Q |
107 |
tataccccatacgtaccgaattcttcacat |
136 |
Q |
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| T |
45982969 |
tataccccatacgtaccgaattcttcacat |
45982998 |
T |
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