View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17565_high_2 (Length: 507)

Name: NF17565_high_2
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17565_high_2
NF17565_high_2
[»] chr1 (5 HSPs)
chr1 (18-505)||(24278921-24279418)
chr1 (208-341)||(24278404-24278537)
chr1 (212-292)||(30508424-30508504)
chr1 (67-100)||(19912695-19912728)
chr1 (18-47)||(19912734-19912763)
[»] chr5 (5 HSPs)
chr5 (18-302)||(40934650-40934943)
chr5 (208-341)||(38838703-38838837)
chr5 (18-95)||(38838539-38838617)
chr5 (67-100)||(40571188-40571221)
chr5 (18-47)||(40571227-40571256)
[»] chr3 (3 HSPs)
chr3 (18-341)||(18558637-18558961)
chr3 (18-101)||(20010539-20010621)
chr3 (214-292)||(19272286-19272364)
[»] chr6 (5 HSPs)
chr6 (101-341)||(11233728-11233965)
chr6 (208-341)||(8671410-8671544)
chr6 (18-101)||(22620640-22620722)
chr6 (19-95)||(8671253-8671330)
chr6 (18-61)||(11233647-11233690)
[»] scaffold0023 (1 HSPs)
scaffold0023 (208-341)||(148403-148536)
[»] chr8 (5 HSPs)
chr8 (208-317)||(3301724-3301834)
chr8 (18-101)||(36283017-36283099)
chr8 (18-101)||(26906968-26907051)
chr8 (191-308)||(25556727-25556846)
chr8 (22-95)||(3301562-3301636)
[»] chr4 (4 HSPs)
chr4 (191-292)||(723833-723936)
chr4 (216-291)||(36541815-36541890)
chr4 (146-188)||(1677458-1677500)
chr4 (146-188)||(1683986-1684028)
[»] chr7 (2 HSPs)
chr7 (191-308)||(360133-360250)
chr7 (208-292)||(18308364-18308452)
[»] chr2 (2 HSPs)
chr2 (18-47)||(8166359-8166388)
chr2 (67-100)||(8166394-8166427)


Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Complemental strand, 24279418 - 24278921
Alignment:
Q  18 gataatgggcgagttagttccaatttcttaattatgagagaaaagagcacaacaaataagaaaaataggtagaagaaataaggc------------tttt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||            ||||    
T  24279418 gataatgggcgagttagttccaatttcttaattatgagagaaaagagcacaaaaaataagaaaaataggtagaagaaataaggcgagtatttacactttt 24279319  T
Q  106 ttgttttgaagaaaaattttatgatcaatannnnnnnngtgacaatatatttccactttttgattaaaagagaatttcttgccagaaaatatattttgca 205  Q
    ||||||||||||||||||| ||||||||||        ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  24279318 ttgttttgaagaaaaattt-atgatcaatattttttt-gtgacaatatatttccactttttaattaaaagagaatttcttaccagaaaatatattttgca 24279221  T
Q  206 gcttaatttcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatacatcatatgtggataataaatcttatagtcaaattaact 305  Q
     ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||    
T  24279220 acttaatttcaaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatacatcatatgtagataataagtcttatagtcaaattagct 24279121  T
Q  306 ttacatagtggagtgagcgaattagtttggatttaaataatggaagttgattctataaaaatttatcttgagcaaaaatatagtctgattgggtattgta 405  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24279120 ttacatagtggagtgagcaaattagtttggatttaaataatggaagttgattctataaaaatttatcttgagcaaaaatatagtctgattgggtattgta 24279021  T
Q  406 atgcaacatgcacatgaggcacctctgatatcacgagactcgattattgttaatttgtcaggttagattgaaagttgttaaaatatcattttctctgctc 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   || |||||||| |||||||||||||| ||||||||    
T  24279020 atgcaacatgcacatgaggcacctctgatatcacgagactcgattattgctaatttgtcaggagtgaatgaaagttattaaaatatcatttgctctgctc 24278921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 208 - 341
Target Start/End: Complemental strand, 24278537 - 24278404
Alignment:
Q  208 ttaatttcgaagtctcttatcgatttt-gtttatgtggcaattattttttggtgcatatacatcatatgtggataataaatcttatagtcaaattaactt 306  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||    
T  24278537 ttaattttgaagtctcttatcgatttttgtttatgttgcaattattttttggtgcatatacatcatatgtg-ataataagtcttatagtcaaattagctt 24278439  T
Q  307 tacatagtggagtgagcgaattagtttggatttaa 341  Q
    |||||||||||||||||||||||||||||||||||    
T  24278438 tacatagtggagtgagcgaattagtttggatttaa 24278404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 30508424 - 30508504
Alignment:
Q  212 tttcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatacatcatatgtggataataaatcttat 292  Q
    |||||||| |||||||| ||||||||||| | |||||| ||||||||||||||||||| || ||| |||||| | ||||||    
T  30508424 tttcgaaggctcttatcaattttgtttattttgcaattgttttttggtgcatatacataatttgtagataatcagtcttat 30508504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 19912728 - 19912695
Alignment:
Q  67 caacaaataagaaaaataggtagaagaaataagg 100  Q
    ||||||||||||||||||||||||||||||||||    
T  19912728 caacaaataagaaaaataggtagaagaaataagg 19912695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 19912763 - 19912734
Alignment:
Q  18 gataatgggcgagttagttccaatttctta 47  Q
    ||||||||||||||||||||||||||||||    
T  19912763 gataatgggcgagttagttccaatttctta 19912734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 40934650 - 40934943
Alignment:
Q  18 gataatgggcgagttagttccaatttcttaattatgagagaaaagagcacaacaaataagaaaaataggtagaagaaataaggc------------tttt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||    
T  40934650 gataatgggcgagttagttccaatttcttaattatgagagaaaagagcacaacaaataagaaaaataggtagaagaaataaggcgagtatttacactttt 40934749  T
Q  106 ttgttttgaagaaaaattttatgatcaatannnnnnnngtgacaatatatttccactttttgattaaaagagaatttcttgccagaaaatatattttgca 205  Q
    ||| ||||||||||||||| ||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40934750 ttgatttgaagaaaaattt-atgatcaatatttttt--gtgacaatatatttccactttttgattaaaagagaatttcttgccagaaaatatattttgca 40934846  T
Q  206 gcttaatttcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatacatcatatgtggataataaatcttatagtcaaatta 302  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40934847 acttaatttcgaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatacatcatatgtggataataagtcttatagtcaaatta 40934943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 208 - 341
Target Start/End: Original strand, 38838703 - 38838837
Alignment:
Q  208 ttaatttcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatacatcatatgtggataataaatcttatagtc-aaattaactt 306  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||    
T  38838703 ttaatttcgaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatacatcatatgtggataataagtcttatagtcaaaattagctt 38838802  T
Q  307 tacatagtggagtgagcgaattagtttggatttaa 341  Q
    |||||||| ||||||||||||||||||||||||||    
T  38838803 tacatagtagagtgagcgaattagtttggatttaa 38838837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 38838539 - 38838617
Alignment:
Q  18 gataatgggcgagttagttccaatttcttaa-ttatgagagaaaagagcacaacaaataagaaaaataggtagaagaaa 95  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  38838539 gataatgggcgagttagttccaatttcttaaattatgagagaaaaaagcacaacaaataagaaaaataggtagaagaaa 38838617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 40571221 - 40571188
Alignment:
Q  67 caacaaataagaaaaataggtagaagaaataagg 100  Q
    ||||||||||||||||||||||||||||||||||    
T  40571221 caacaaataagaaaaataggtagaagaaataagg 40571188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 40571256 - 40571227
Alignment:
Q  18 gataatgggcgagttagttccaatttctta 47  Q
    ||||||||||||||||||||||||||||||    
T  40571256 gataatgggcgagttagttccaatttctta 40571227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 18 - 341
Target Start/End: Original strand, 18558637 - 18558961
Alignment:
Q  18 gataatgggcgagttagttccaatttcttaattatgagagaaaagagcacaacaaataagaaaaataggtagaagaaataaggcttttttgt----tttg 113  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||  |    ||||    
T  18558637 gataatgggcgagttagttccaatttctta-ttatgagagaaaagagtacaacaaataagaaaaataggtagaagaaataaggcgtgttattacactttg 18558735  T
Q  114 aagaaaaattttatgatcaatannnnnnnngtgacaatatatttccactttttgattaaaagagaatttcttgccagaaaatatattttgcagcttaatt 213  Q
    ||||||||||| ||||||||||        |||||||||||||| | ||||||||||||||| |||||||||||||||||| |||||||||| |||||||    
T  18558736 aagaaaaattt-atgatcaatatatttt--gtgacaatatattttcgctttttgattaaaagtgaatttcttgccagaaaaaatattttgcaacttaatt 18558832  T
Q  214 tcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatacatcatatgtggataataaatcttatagtc-aaattaactttacata 312  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||| |||||||||    
T  18558833 tcgaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatacatcacatgtggataataagtcttatagtcaaaattagctttacata 18558932  T
Q  313 gtggagtgagcgaattagtttggatttaa 341  Q
    |||||||||||||||||||||||||||||    
T  18558933 gtggagtgagcgaattagtttggatttaa 18558961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 20010621 - 20010539
Alignment:
Q  18 gataatgggcgagttagttccaatttcttaattatgagagaaaagagcacaacaaataagaaaaataggtagaagaaataaggc 101  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20010621 gataatgggcgagttagttccaatttctta-ttatgagagaaaagagcacaacaaataagaaaaataggtagaagaaataaggc 20010539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 214 - 292
Target Start/End: Original strand, 19272286 - 19272364
Alignment:
Q  214 tcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatacatcatatgtggataataaatcttat 292  Q
    |||||| |||||||||||||||||||| | | ||||  |||| ||||||||||||| || ||| |||||| | ||||||    
T  19272286 tcgaagactcttatcgattttgtttattttgaaattgcttttgggtgcatatacataatctgttgataatcagtcttat 19272364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 101 - 341
Target Start/End: Original strand, 11233728 - 11233965
Alignment:
Q  101 cttttttgttttgaagaaaaattttatgatcaatannnnnnnngtgacaatatatttccactttttgattaaaagagaatttcttgccagaaaatatatt 200  Q
    |||||||| ||||||||||||||| ||||||||||        ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  11233728 cttttttgatttgaagaaaaattt-atgatcaatatttttt--gtgacaatatatttccactttttgattaaaaaagaatttcttgccagaaaatatatt 11233824  T
Q  201 ttgcagcttaatttcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatacatcatatgtggataataaatcttatagtcaaat 300  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  11233825 ttgcaacttaatttcgaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatacatcatatgtggataataagtcttatggtcaaat 11233924  T
Q  301 taactttacatagtggagtgagcgaattagtttggatttaa 341  Q
    || |||||||||||||||||||||||||||| |||||||||    
T  11233925 tagctttacatagtggagtgagcgaattagtgtggatttaa 11233965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 208 - 341
Target Start/End: Original strand, 8671410 - 8671544
Alignment:
Q  208 ttaatttcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatacatcatatgtggataataaatcttatagtc-aaattaactt 306  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||| |||    
T  8671410 ttaatttcgaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatacatcatatgcggataataagtcttatagtcaaaattagctt 8671509  T
Q  307 tacatagtggagtgagcgaattagtttggatttaa 341  Q
    |||||||||||||||||||||||||||||||||||    
T  8671510 tacatagtggagtgagcgaattagtttggatttaa 8671544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 22620722 - 22620640
Alignment:
Q  18 gataatgggcgagttagttccaatttcttaattatgagagaaaagagcacaacaaataagaaaaataggtagaagaaataaggc 101  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22620722 gataatgagcgagttagttccaatttctta-ttatgagagaaaagagcacaacaaataagaaaaataggtagaagaaataaggc 22620640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 8671253 - 8671330
Alignment:
Q  19 ataatgggcgagttagttccaatttcttaa-ttatgagagaaaagagcacaacaaataagaaaaataggtagaagaaa 95  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8671253 ataatgggcgagttatttccaatttcttaaattatgagagaaaagagcacaacaaataagaaaaataggtagaagaaa 8671330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 11233647 - 11233690
Alignment:
Q  18 gataatgggcgagttagttccaatttcttaattatgagagaaaa 61  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||    
T  11233647 gataatgtgcgagttagttccaaattcttaattatgagagaaaa 11233690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 208 - 341
Target Start/End: Original strand, 148403 - 148536
Alignment:
Q  208 ttaatttcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatacatcatatgtggataataaatcttatagtcaaattaacttt 307  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  148403 ttaatttcgaagtctcttatcgattttgtttatgttgcaattattttttggtgcatatacatcatatgtggataataagtcttatagtcaaattagcttt 148502  T
Q  308 acatagtggagtgagcgaattagtttggatttaa 341  Q
    |||||||||| ||| |||||||||||||||||||    
T  148503 acatagtggaatgatcgaattagtttggatttaa 148536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 208 - 317
Target Start/End: Original strand, 3301724 - 3301834
Alignment:
Q  208 ttaatttcgaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatacatcatatgtggataataaatcttatagtc-aaattaactt 306  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |||    
T  3301724 ttaatttcgaagtttcttatcgattttgtttatgttgcaattattttttggtgcatatacatcatatgtggataataagtcttatagtcaaaattagctt 3301823  T
Q  307 tacatagtgga 317  Q
    |||||||||||    
T  3301824 tacatagtgga 3301834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 36283099 - 36283017
Alignment:
Q  18 gataatgggcgagttagttccaatttcttaattatgagagaaaagagcacaacaaataagaaaaataggtagaagaaataaggc 101  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36283099 gataatgggcgagttagttccaatttctta-ttatgagagaaaagaccacaacaaataagaaaaataggtagaagaaataaggc 36283017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 26907051 - 26906968
Alignment:
Q  18 gataatgggcgagttagttccaatttcttaattatgagagaaaagagcacaacaaat-aagaaaaataggtagaagaaataaggc 101  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26907051 gataatgggcgagttagttccaatttctt-attatgagagaaaagagcacaacaaataaagaaaaataggtagaagaaataaggc 26906968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 191 - 308
Target Start/End: Original strand, 25556727 - 25556846
Alignment:
Q  191 aaaatatattttgcagc-ttaatttcgaagtctcttatcgattttgtttatgtggcaattatttt-ttggtgcatatacatcatatgtggataataaatc 288  Q
    |||||||||||| || | ||||||||| ||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| ||    
T  25556727 aaaatatattttacaaccttaatttcggagtctcttatcaattttgtttatcttgcaattattttgttggtgcatatacatcatatgtggataataagtc 25556826  T
Q  289 ttatagtcaaattaacttta 308  Q
    |||||| ||||||| |||||    
T  25556827 ttatagacaaattagcttta 25556846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 3301562 - 3301636
Alignment:
Q  22 atgggcgagttagttccaatttcttaat-tatgagagaaaagagcacaacaaataagaaaaataggtagaagaaa 95  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  3301562 atgggcgagttagttccaatttcttaaaatatgagagaaaagagcacaacaaataagaaaaataggtagaagaaa 3301636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 191 - 292
Target Start/End: Original strand, 723833 - 723936
Alignment:
Q  191 aaaatatattttgcagc-ttaatttcgaagtctcttatcgattttgtttatgtggcaattatttt-ttggtgcatatacatcatatgtggataataaatc 288  Q
    |||||||||||| || | ||||||||||||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| ||    
T  723833 aaaatatattttacaaccttaatttcgaagtctcttatcaattttgtttattttgcaattattttgttggtgcatatacatcatatgtggataataagtc 723932  T
Q  289 ttat 292  Q
    ||||    
T  723933 ttat 723936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 291
Target Start/End: Complemental strand, 36541890 - 36541815
Alignment:
Q  216 gaagtctcttatcgattttgtttatgtggcaattattttttggtgcatatacatcatatgtggataataaatctta 291  Q
    |||| ||||||||||| |||||||| | |||||| |||||  |||||||||| | ||||||||||||| |||||||    
T  36541890 gaaggctcttatcgatattgtttattttgcaattgtttttcagtgcatatacttaatatgtggataatcaatctta 36541815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 1677458 - 1677500
Alignment:
Q  146 gacaatatatttccactttttgattaaaagagaatttcttgcc 188  Q
    |||||||||||||||||||||||||  |||| |||||||||||    
T  1677458 gacaatatatttccactttttgatttgaagaaaatttcttgcc 1677500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 1683986 - 1684028
Alignment:
Q  146 gacaatatatttccactttttgattaaaagagaatttcttgcc 188  Q
    |||||||||||||||||||||||||  |||| |||||||||||    
T  1683986 gacaatatatttccactttttgatttgaagaaaatttcttgcc 1684028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 191 - 308
Target Start/End: Complemental strand, 360250 - 360133
Alignment:
Q  191 aaaatatattttgcagc-ttaatttcgaagtctcttatcgattttgtttatgtggcaattatttt-ttggtgcatatacatcatatgtggataataaatc 288  Q
    |||||||||||| || | ||||||||||||||||  ||| ||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||| ||    
T  360250 aaaatatattttacaaccttaatttcgaagtctc--atcaattttgtttattttgcaattattttgttggtgcatatacatcatatgtggataataagtc 360153  T
Q  289 ttatagtcaaattaacttta 308  Q
    |||||| ||||||| |||||    
T  360152 ttatagacaaattagcttta 360133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 18308364 - 18308452
Alignment:
Q  208 ttaatttcgaagtctcttatcgattttgtttatgtggcaat----tattttttggtgcatatacatcatatgtggataataaatcttat 292  Q
    ||||||| |||| |||||||||||||||||||| | |||||    | |||||||||||| |||||| || |||||||||| | ||||||    
T  18308364 ttaattttgaaggctcttatcgattttgtttattttgcaattgtgttttttttggtgcaaatacataatttgtggataattagtcttat 18308452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 8166359 - 8166388
Alignment:
Q  18 gataatgggcgagttagttccaatttctta 47  Q
    ||||||||||||||||||||||||||||||    
T  8166359 gataatgggcgagttagttccaatttctta 8166388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 8166394 - 8166427
Alignment:
Q  67 caacaaataagaaaaataggtagaagaaataagg 100  Q
    ||||||||||||||||||| ||||||||||||||    
T  8166394 caacaaataagaaaaatagatagaagaaataagg 8166427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University