View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17565_high_22 (Length: 249)
Name: NF17565_high_22
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17565_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 21030934 - 21030697
Alignment:
| Q |
1 |
tgatacctgttacctgaagcatggatttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccattaatagttgtacagttgaatct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
21030934 |
tgatacctgttacctgaagcatggatttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccactaatagtgttacagttgaatct |
21030835 |
T |
|
| Q |
101 |
ggaaatgttagtaacactgagcatgggaat-ggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtgaacttgcttcaacaagcaact |
199 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21030834 |
ggaaatgttagtaacactgagcatgggaataggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtaaacttgcttcaacaagcaact |
21030735 |
T |
|
| Q |
200 |
ttgttatcctcagatgtgtctccttctgtttctacttc |
237 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
21030734 |
ctgttatcctcagctgtgtctccttctgtttctacttc |
21030697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 18482960 - 18482724
Alignment:
| Q |
1 |
tgatacctgttacctgaagcatggatttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccattaatagttgtacagttgaatct |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
18482960 |
tgatacctgttacctgaagcatggatttcccaatgctaacataccaggaaattccactgcctccactcaaggatccactaatagtgttacagttgaatct |
18482861 |
T |
|
| Q |
101 |
ggaaatgttagtaacactgagcatgggaatggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtgaacttgcttcaacaagcaactt |
200 |
Q |
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| T |
18482860 |
ggaaatgtcagtaacactgagcatgggaatggtgactcaggttttagtatttctcaagacagatatgagcaccttgtaaacttgcttcaacaagcaactc |
18482761 |
T |
|
| Q |
201 |
tgttatcctcagatgtgtctccttctgtttctacttc |
237 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||| |
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| T |
18482760 |
tgttatcctcagctgtgtctccttctgtttctacttc |
18482724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 231
Target Start/End: Complemental strand, 38848622 - 38848387
Alignment:
| Q |
8 |
tgttacctgaagcatggatttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccattaatagttgtacagttgaatctggaaatg |
107 |
Q |
| |
|
||||| ||||||||||||||||| || |||||| | ||| |||||||| | | ||||| ||||| | ||||||| ||||||||||||||||||| |
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| T |
38848622 |
tgttatctgaagcatggatttcctcatcctaacaaatcagcaaattccaatacacttactcatggatctactaatagtgttacagttgaatctggaaata |
38848523 |
T |
|
| Q |
108 |
ttagtaacactgagcatgggaatggtgactcaggt------------ttcagtatttctcaagacagatatgagcaccttgtgaacttgcttcaacaagc |
195 |
Q |
| |
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||||||||| |||| ||||||||||| ||| || ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38848522 |
caagtaacactcagcaggggaatggtgattcaagtggtgattcaagtttcagtatttctcaagacagatatgagcaccttgtgagtttgcttcaacaagc |
38848423 |
T |
|
| Q |
196 |
aactttgttatcctcagatgtgtctccttctgtttc |
231 |
Q |
| |
|
||||||||| | ||| |||||||||||||||||| |
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| T |
38848422 |
aactttgttgcctacagctgtgtctccttctgtttc |
38848387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 28521040 - 28520803
Alignment:
| Q |
1 |
tgatacctgttacctgaagcatggatttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccattaatagttgtacagttgaatct |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
28521040 |
tgatacttgttacctgaagcatggatttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccactaatagtgttacagctgaatct |
28520941 |
T |
|
| Q |
101 |
ggaaatgttagtaacactgagcatgggaat-ggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtgaacttgcttcaacaagcaact |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28520940 |
ggaaatgttagtaacactgagcatgggaataggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtgaacttgcttcaacaagcaacc |
28520841 |
T |
|
| Q |
200 |
ttgttatcctcagatgtgtctccttctgtttctacttc |
237 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
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| T |
28520840 |
ctgttatcctcagctgtgtctccttctgtttctacttc |
28520803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 42134807 - 42135043
Alignment:
| Q |
1 |
tgatacctgttacctgaagcatggatttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccattaatagttgtacagttgaatct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
42134807 |
tgatacctgttacctgaagcatggatttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccactaatagtgttacagttgaatct |
42134906 |
T |
|
| Q |
101 |
ggaaatgttagtaacactgagcatgggaatggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtgaacttgcttcaacaagcaactt |
200 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42134907 |
ggaaatgtcagcaacactgagcatgggaatggtgactcaggtttcagtatttctcaagacagatatgagcaccttgtaaacttgcttcaacaagcaactc |
42135006 |
T |
|
| Q |
201 |
tgttatcctcagatgtgtctccttctgtttctacttc |
237 |
Q |
| |
|
||| |||||||| ||||||||||||| |||||||||| |
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|
| T |
42135007 |
tgtcatcctcagctgtgtctccttctatttctacttc |
42135043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 14505893 - 14505741
Alignment:
| Q |
1 |
tgatacctgttacctgaagcatggatttcccaatgctaacagaccaggaaattccactgcctccactcaaggatccattaatagttgtacagttgaatct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||||||| |
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|
| T |
14505893 |
tgatacttgttacctgaagcatggatttcccaatgctaacggaccaggaaattccactgcctccactcaaggatccactaattgtgttacagttgaatct |
14505794 |
T |
|
| Q |
101 |
ggaaatgttagtaacactgagcatgggaatggtgactcaggtttcagtatttc |
153 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
14505793 |
ggaaatgttagtaacactgagcatgggaatggtgaatcaggtttcagtatttc |
14505741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 17481899 - 17481713
Alignment:
| Q |
48 |
gaaattccactgcctccactcaaggatccattaatagttgtacagttgaatctggaaatgttagtaacactgagcatgggaatggtgactcaggtttcag |
147 |
Q |
| |
|
||||||||| ||| | |||||| | ||||| ||||||| |||||| |||| ||| |||| |||||||||||||| |||||||||| ||||||||||| |
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|
| T |
17481899 |
gaaattccaatgctttcactcatgaatccactaatagtgttacagtcgaatttggtaatggaggtaacactgagcattggaatggtgaatcaggtttcag |
17481800 |
T |
|
| Q |
148 |
tatttctcaagacagatatgagcaccttgtgaacttgcttcaacaagcaactttgttatcctcagatgtgtctccttctgtttctac |
234 |
Q |
| |
|
||||||||| |||| |||| ||||||||||||||||| ||||||||| ||| || ||| ||||| |||||||||||||||||||| |
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|
| T |
17481799 |
tatttctcaggacacatatcagcaccttgtgaacttggttcaacaagaaacctttttaccctcaacagtgtctccttctgtttctac |
17481713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 18835089 - 18835042
Alignment:
| Q |
147 |
gtatttctcaagacagatatgagcaccttgtgaacttgcttcaacaag |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
18835089 |
gtatttctcaagacagatatgagcaccttgtttccttgcttcaacaag |
18835042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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