View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17565_high_23 (Length: 246)
Name: NF17565_high_23
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17565_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 3 - 230
Target Start/End: Complemental strand, 30699071 - 30698851
Alignment:
| Q |
3 |
tatagccgtcattttcgatgtgtatattgcttactcatttcaattaaactatttcatcataattaacctaaacattacagacactctcaatgccatcaaa |
102 |
Q |
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| T |
30699071 |
tatagtcgtcattttcgatgtgtatattgcttactcatttcaataatactatttcatcataattaacctaaacattccagacattctcaatgccatcaaa |
30698972 |
T |
|
| Q |
103 |
agtcctacccaattagtatcagttatcacaagtaggagaaacttaatgagactaaataaaatgaaacatactggtagtactgttgtactaatttatccaa |
202 |
Q |
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| T |
30698971 |
agtcctacccaattagt-------atcacaagtaggagaaacttaatgagactaagtaaaatgaaacatactggtagtactgttgcactaatttatccaa |
30698879 |
T |
|
| Q |
203 |
ctcaattttaaactaatatgttaccact |
230 |
Q |
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|||||||||||||||||||||| ||||| |
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| T |
30698878 |
ctcaattttaaactaatatgttgccact |
30698851 |
T |
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