View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17565_high_4 (Length: 491)
Name: NF17565_high_4
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17565_high_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Original strand, 48514901 - 48515369
Alignment:
| Q |
18 |
gctataagcccaaaatttagactgtgaaactatcccccttgaactatgtttcttcattgatatgtttctcttgtaattgacttgttagcttttgaaacag |
117 |
Q |
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| T |
48514901 |
gctataagcccaaaatttagactgtgaaactatcccccttggt-----tttcttcattgatatgtttctcttgtaattgacttgttagcttttgaagcag |
48514995 |
T |
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| Q |
118 |
actactttggttttgacagtttaatgacagtaagatcgaggtattatttttccttgaattggaaagaaccagatgtcatttnnnnnnnntgtatatgctt |
217 |
Q |
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| T |
48514996 |
actactttggttttgacagtttaatgacagtaagatcgaggtattatttttccttgaattggaaagaaccagatgtcatttaaaaaaaatgtatatgctt |
48515095 |
T |
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| Q |
218 |
ggtggaatctttagaaatcatgcatactttaccttagttcttcaaatatatgtggactagtgctcctaaattatcagttaggtgtgagagtcccagtctt |
317 |
Q |
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| T |
48515096 |
ggtggaatctttagaaatcatgcataatttaccttagttcttcaaatatatgtggactagtgctcctaaattatcagttaggtgtgagagtcccagtctt |
48515195 |
T |
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| Q |
318 |
ttgttagtttgaaaccaacatatctttctccatctgcattttatgtatttctatgacaatcaatttttgaatttcaagcatctcttgctaaggttgtaca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48515196 |
ttgttagtttgaaaccaacatatctttctccatctgcattttatgtatttctatgacaatcaatttttgaatttcaagcatctcttgctaaggttgtaca |
48515295 |
T |
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| Q |
418 |
gaaatgatcacttgggctcttttgagccagcttactctaatgttttttattgttagtatttctgtagtgttagg |
491 |
Q |
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| T |
48515296 |
gaaatgatcacttgggctcttttgagccagcttactctaatgtgttttattgttagtattgctgtagtgttagg |
48515369 |
T |
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