View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17565_low_1 (Length: 554)
Name: NF17565_low_1
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17565_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 16 - 547
Target Start/End: Original strand, 41338707 - 41339258
Alignment:
| Q |
16 |
agttttccagatcatgagcataatacttggctattgataattctacctgtaaaagctaaaaatgtaacgtgatttttaaaagtaaaatatcaaattaatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41338707 |
agttttccagatcatgagcataatacttggctattgataattctacctgtaaaagctaaaaatgtaacgtgatttttaaaagtaaaatatcaaattaatt |
41338806 |
T |
|
| Q |
116 |
gcttttttgggatatatcacgagatgcttgctttgtattccataatggttcaaacacttaagatttctagaaaccactcttctttctctttttagg---- |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41338807 |
gcttttttgggatatatcacgagatgcttgctttgtattccataatggttcaaacacttaagatttctagaaaccactcttctttctctttttaggctct |
41338906 |
T |
|
| Q |
212 |
----------------ttggtgtttcacctataagttaaccatgttccattctggattcacgtattgcatatgaagtgaaacaagtggcatggttgaaag |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41338907 |
tctttctctttttaggttggtgtttcacctataagttaaccatgttccattctggattcacgtattgcatatgaaatgaaacaagtggcatggttgaaag |
41339006 |
T |
|
| Q |
296 |
ttcaacacgtattgaactttatgacatgnnnnnnnnnnnnnnnnctaatggataaaatgaacatgatatgaaagatattagttataaagtcatcctccaa |
395 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41339007 |
ttcaacacgtattgaactttatgacatgaaaaagaaaaaagaaactaatggataaaatgaacatgatatgaaagatattagttataaagtcatcctccaa |
41339106 |
T |
|
| Q |
396 |
actcatgatcatgaatttcgtacaggttttctgtgaacaagtactgtgtgtgttacacattatatataaagttctgaagagattttctttttcttctcta |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41339107 |
actcatgatcatgaatttcgtacaggttttctgtgaacaagtactgtgtgtgttacacattatatataaagttctgaagagattttctttttcttctcta |
41339206 |
T |
|
| Q |
496 |
ttttcaaatcaactcaactctcattttcatatgaaatgcttttatatctgtg |
547 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41339207 |
ttttcaaatcaactcaactctcattttcatatgaaatgcttttatatttgtg |
41339258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University