View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17565_low_10 (Length: 405)
Name: NF17565_low_10
Description: NF17565
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17565_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 45794862 - 45795106
Alignment:
| Q |
13 |
tgatgatgtctacactaccatgaatttcgcagtctctgtagaattggcgctgcgcgactgcgtataagcttccttctccgccgtcaattttgcagttgaa |
112 |
Q |
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| T |
45794862 |
tgatgatgtctacactaccatgaatttcgcagtctctgtagaattggcgctgcgcgactgcgtataagcttccttctccgccgtcaattttgcagctgaa |
45794961 |
T |
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| Q |
113 |
gaatgctgcatgatcagaaagtacaaggagtgctgatgctcctggtacgctagctggagctgtgaaacccatatctttgcagatgaatcttttgcccttt |
212 |
Q |
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| T |
45794962 |
gaatgctgcatgatcagaaagtacaaggagtgctgatgctcctggtacgctagctggagctgtgaaacccatatctttgcagatgaatcttttgcccttt |
45795061 |
T |
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| Q |
213 |
accactgcatttcacaagagtcaaaatcaaatgttgttatgtgtg |
257 |
Q |
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| T |
45795062 |
accactgcatttcacaagagtgaaaatcaaatgttgttatatgtg |
45795106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 291 - 395
Target Start/End: Original strand, 45795098 - 45795202
Alignment:
| Q |
291 |
ttatatgtgttgtttttagtactcggtagatattaatgtttttattttagtccctgtaaaactaattcttattattgataaagatgattatcttctttag |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45795098 |
ttatatgtgttgtttttagtactcggtagatattaatgtttttattttagtccctgtaaaactaattcttattattaataaagatgattatcttctttag |
45795197 |
T |
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| Q |
391 |
tctct |
395 |
Q |
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||||| |
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| T |
45795198 |
tctct |
45795202 |
T |
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